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The map label for this gene is ybcM [H]

Identifier: 238920434

GI number: 238920434

Start: 2445369

End: 2446169

Strand: Direct

Name: ybcM [H]

Synonym: NT01EI_2545

Alternate gene names: 238920434

Gene position: 2445369-2446169 (Clockwise)

Preceding gene: 238920433

Following gene: 238920435

Centisome position: 64.14

GC content: 64.29

Gene sequence:

>801_bases
ATGCACGATCCCGTTACTCCCACGCCAACGGTACAGCAGATCAGCGCACGCCAAAGCCACCAGCTGCGGCGGGTCACCCT
GTTCAGTCCGGCGTTGTGCCGGGTTCGGCAGGGCAGCAAGACCATCCAATGGGGCGAGCGTTATGAAGTGACAGGAGGAG
ATTCACTGGTGCTGTTCCCCGGCGGCAGTGAAGTGAGCATGGCCAACCAGACCGGCGCGGGCTACTATCGTGCCGAAATG
CTCTATCTGCCCGCGGCGCTGCTACGCCAGTTTCGAAAGCACTATCCACAGGCGGTGCCCTCCGACGGGACGACCGCCTC
ACTGTCGCTGCCCATGACGCCAGCGCTGACGCTGCTGTGGGACACCATGATGGATGCGCTGCGGGCGCCGCTGGCGCCAC
CGCTGCTTAACCATCTGGCCGAAAGTCTGCTGCTGGCGCTACAGCCCAGCGGCCATACCGCGCTGCTGCTTAACGAGCGC
CACGATCGTCTCACGGAGCAGATCCAGCAACTGCTGTTACTCGATCCCGCCTATGCCTGGCAGGCAACCGACATCGCCCA
GCGCCTGCATATGGCCGAGTCCACCCTACGCCGCCGCCTGAACGCCGAAGGAAAACGCTTTCGCGATATTCTGGACGATG
TGCGCCTTGGCCAGGCGCTGCTGGCGCTGCAGTCGGGGAATACGCCCATCGGCGATATCGCCAGCCAAAGCGGCTATGCC
AGTCCCTCGCGTTTCACTGCCCGCTTTGTCCGCCGCTACGGCCTCACCCCCAGCGCTCTGCGCCAGGCCATGCGCCGATA
A

Upstream 100 bases:

>100_bases
TCCAGCGGCGCCTTGGTTGGCTTTATGCTGAACGCCAACAAACTGGCCACTGCACAGCTGGTGCCGGTATACGGTCACTG
AGTTTTGGAGACAGCAGCAG

Downstream 100 bases:

>100_bases
GCGCTAACAGTAAACTCGCGTCATCGAACATAATAACGACGAAAAATATGGTGTCCCCAAAAACAGACACGTCGAAATTG
AGTCTATCTTGAACAAAAGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MHDPVTPTPTVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFPGGSEVSMANQTGAGYYRAEM
LYLPAALLRQFRKHYPQAVPSDGTTASLSLPMTPALTLLWDTMMDALRAPLAPPLLNHLAESLLLALQPSGHTALLLNER
HDRLTEQIQQLLLLDPAYAWQATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYA
SPSRFTARFVRRYGLTPSALRQAMRR

Sequences:

>Translated_266_residues
MHDPVTPTPTVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFPGGSEVSMANQTGAGYYRAEM
LYLPAALLRQFRKHYPQAVPSDGTTASLSLPMTPALTLLWDTMMDALRAPLAPPLLNHLAESLLLALQPSGHTALLLNER
HDRLTEQIQQLLLLDPAYAWQATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYA
SPSRFTARFVRRYGLTPSALRQAMRR
>Mature_266_residues
MHDPVTPTPTVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFPGGSEVSMANQTGAGYYRAEM
LYLPAALLRQFRKHYPQAVPSDGTTASLSLPMTPALTLLWDTMMDALRAPLAPPLLNHLAESLLLALQPSGHTALLLNER
HDRLTEQIQQLLLLDPAYAWQATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYA
SPSRFTARFVRRYGLTPSALRQAMRR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=255, Percent_Identity=38.8235294117647, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1789932, Length=152, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29592; Mature: 29592

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDPVTPTPTVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFP
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEECCCEEEECCCCEEEEEC
GGSEVSMANQTGAGYYRAEMLYLPAALLRQFRKHYPQAVPSDGTTASLSLPMTPALTLLW
CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHH
DTMMDALRAPLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQLLLLDPAYAW
HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHH
QATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCC
SPSRFTARFVRRYGLTPSALRQAMRR
CHHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MHDPVTPTPTVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFP
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEECCCEEEECCCCEEEEEC
GGSEVSMANQTGAGYYRAEMLYLPAALLRQFRKHYPQAVPSDGTTASLSLPMTPALTLLW
CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHH
DTMMDALRAPLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQLLLLDPAYAW
HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHH
QATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCC
SPSRFTARFVRRYGLTPSALRQAMRR
CHHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]