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The map label for this gene is ihfB [H]

Identifier: 238920344

GI number: 238920344

Start: 2345661

End: 2345945

Strand: Reverse

Name: ihfB [H]

Synonym: NT01EI_2454

Alternate gene names: 238920344

Gene position: 2345945-2345661 (Counterclockwise)

Preceding gene: 238920345

Following gene: 238920343

Centisome position: 61.54

GC content: 51.58

Gene sequence:

>285_bases
ATGACCAAGTCAGAACTCATTGAAAGACTTGCCAGTCAGCAGCCTCATCTGCCTGCTAAGGCCGTTGAGGATGCGGTAAA
AGAGATGCTGGAACATATGGCAGCTACGCTAGCCGATGGTGAACGCATCGAGATCCGTGGTTTTGGCAGTTTTTCACTTC
ACTACCGTGCTCCCCGCATCGGTCGTAACCCGAAAACCGGCGAGAAAGTGGAGCTGGAAGGTAAATACGTTCCCCACTTT
AAACCGGGTAAAGAGTTGCGCGATCGGGCAAACATCTACGCTTGA

Upstream 100 bases:

>100_bases
TAAAGGCGAATAATGATGAGGGCGGCGTTAGCCGCCCTATAACGGTAGTTAAGCTGCATCGTGCGCTCTCCCTTAATGGG
AGACACAGCTTGGAGGATAT

Downstream 100 bases:

>100_bases
CTGCGGATTGAATTGATTAAAATGGCGCCGAATGGCGCCATTTTTCTTTGCCATCCCGCGCCAGTCCTTTCTCCCGTATT
TCTTTCCCCTCCCGTCCGTG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRIGRNPKTGEKVELEGKYVPHF
KPGKELRDRANIYA

Sequences:

>Translated_94_residues
MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRIGRNPKTGEKVELEGKYVPHF
KPGKELRDRANIYA
>Mature_93_residues
TKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRIGRNPKTGEKVELEGKYVPHFK
PGKELRDRANIYA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=94, Percent_Identity=90.4255319148936, Blast_Score=179, Evalue=3e-47,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=34.0659340659341, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=34.0909090909091, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1788005, Length=90, Percent_Identity=34.4444444444444, Blast_Score=60, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10628; Mature: 10497

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRI
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC
GRNPKTGEKVELEGKYVPHFKPGKELRDRANIYA
CCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
TKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRI
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC
GRNPKTGEKVELEGKYVPHFKPGKELRDRANIYA
CCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA