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The map label for this gene is ybbM [H]

Identifier: 238920275

GI number: 238920275

Start: 2283508

End: 2284266

Strand: Direct

Name: ybbM [H]

Synonym: NT01EI_2385

Alternate gene names: 238920275

Gene position: 2283508-2284266 (Clockwise)

Preceding gene: 238920274

Following gene: 238920280

Centisome position: 59.9

GC content: 60.47

Gene sequence:

>759_bases
ATGAATAGCCACAACATTACCGATCAGTCCCTGGTCATGGCCCTGGCGCTGGTCGCCATTGCGCTGGTCATCAGTGGGCG
GGAAAAGCTGGGACTCGGCAAGGACATTCTGTGGAGCGTCAGCCGCGCCATCGTCCAGCTGATCCTGGTGGGCTACGTCT
TAAAGTATATCTTTCATCTGGACAGCGCCCTGCTGACCCTATTGATGGTGCTGTTTATCTGCGTCAACGCGGCCTGGAAC
GCGAAAAAGCGCAGTAAGAACCTCAGCAATGCCTTTGCCATGTCGCTGATCGCCATCGTCACCGGTACCGCGCTGACCCT
GGCGATCCTGATCGTCAGCGGCTCCATCGAATTCACCCCGATGCAGGTGATCCCCATCGCCGGGATGATCGCCGGTAATG
CCATGGTGGCCGTCGGCCTGTGCTATAACAACCTGCGCCAGCGCTTCCACGACGAACGTCAGCGGGTGCAGGAGATGCTC
AGCCTGGGCGCGACCCCGAAGCAGGCATCGGCGGGGATCATCCGCGCCAGCATCAAAGCAGCGATGATCCCCACCGTCGA
CTCCGCCAAAACCGTCGGGCTGGTCAGCCTGCCGGGCATGATGTCGGGCCTGATCTTCGCCGGTATCGATCCGGTCAAGG
CCATCCGCTATCAGATTATGGTGACCTTTATGCTGATCTCCACCGCCAGCCTCTCCACCATCATCGCGGGCTACCTCGCC
TACGCCAGGTTCTACACGGCCCGCGATCAGCTGCGCTAG

Upstream 100 bases:

>100_bases
GATGAGATTACCCAGTGCGACAATGTGATAACCCTGCCACGTCTGGCCGACAGCGACGACGCAGAGGAAGACGGGACCCA
GCCAAACGGAGAGCAGCGCC

Downstream 100 bases:

>100_bases
GCCCATACAAAAATCCCCACGCCATGGCGTGGGGATCAATGGGATAACCGGCCACTATCGCTGCCGGGATTAGCCGCTTA
TTTCATGCAGCCACTGCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MNSHNITDQSLVMALALVAIALVISGREKLGLGKDILWSVSRAIVQLILVGYVLKYIFHLDSALLTLLMVLFICVNAAWN
AKKRSKNLSNAFAMSLIAIVTGTALTLAILIVSGSIEFTPMQVIPIAGMIAGNAMVAVGLCYNNLRQRFHDERQRVQEML
SLGATPKQASAGIIRASIKAAMIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIRYQIMVTFMLISTASLSTIIAGYLA
YARFYTARDQLR

Sequences:

>Translated_252_residues
MNSHNITDQSLVMALALVAIALVISGREKLGLGKDILWSVSRAIVQLILVGYVLKYIFHLDSALLTLLMVLFICVNAAWN
AKKRSKNLSNAFAMSLIAIVTGTALTLAILIVSGSIEFTPMQVIPIAGMIAGNAMVAVGLCYNNLRQRFHDERQRVQEML
SLGATPKQASAGIIRASIKAAMIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIRYQIMVTFMLISTASLSTIIAGYLA
YARFYTARDQLR
>Mature_252_residues
MNSHNITDQSLVMALALVAIALVISGREKLGLGKDILWSVSRAIVQLILVGYVLKYIFHLDSALLTLLMVLFICVNAAWN
AKKRSKNLSNAFAMSLIAIVTGTALTLAILIVSGSIEFTPMQVIPIAGMIAGNAMVAVGLCYNNLRQRFHDERQRVQEML
SLGATPKQASAGIIRASIKAAMIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIRYQIMVTFMLISTASLSTIIAGYLA
YARFYTARDQLR

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=251, Percent_Identity=76.4940239043825, Blast_Score=390, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 27177; Mature: 27177

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSHNITDQSLVMALALVAIALVISGREKLGLGKDILWSVSRAIVQLILVGYVLKYIFHL
CCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSALLTLLMVLFICVNAAWNAKKRSKNLSNAFAMSLIAIVTGTALTLAILIVSGSIEFTP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MQVIPIAGMIAGNAMVAVGLCYNNLRQRFHDERQRVQEMLSLGATPKQASAGIIRASIKA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AMIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIRYQIMVTFMLISTASLSTIIAGYLA
HHCCCCCCCCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YARFYTARDQLR
HHHHHHHHHHCC
>Mature Secondary Structure
MNSHNITDQSLVMALALVAIALVISGREKLGLGKDILWSVSRAIVQLILVGYVLKYIFHL
CCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSALLTLLMVLFICVNAAWNAKKRSKNLSNAFAMSLIAIVTGTALTLAILIVSGSIEFTP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
MQVIPIAGMIAGNAMVAVGLCYNNLRQRFHDERQRVQEMLSLGATPKQASAGIIRASIKA
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
AMIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIRYQIMVTFMLISTASLSTIIAGYLA
HHCCCCCCCCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YARFYTARDQLR
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]