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The map label for this gene is ycfD [H]

Identifier: 238920217

GI number: 238920217

Start: 2224600

End: 2225721

Strand: Direct

Name: ycfD [H]

Synonym: NT01EI_2326

Alternate gene names: 238920217

Gene position: 2224600-2225721 (Clockwise)

Preceding gene: 238920216

Following gene: 238920223

Centisome position: 58.35

GC content: 62.66

Gene sequence:

>1122_bases
ATGCATTATCAACTCGATCTCGACTGGCAGGACTTTCTGCAAAACTATTGGCAAAAACGCCCGTTGGTTATCCGGCACGG
TTTCAAGGACTTCATCGATCCGCTCTCACCGGATGAACTGGCCGGGCTGGCGATGGAGCAAGAGGTGGATAGCCGCCTGG
TCTGCCGCGACGATGGGCAGTGGCAGGTGTCACACGGCCCGTTTACCAGCTACGATCACCTGGGTGAGACCAACTGGTCG
CTGCTGGTACAGGCCGTCGACCACTGGCACACACCGGCGGCGGCGCTGATGCGGCCGTTTCGGCACCTGCCGGACTGGCG
CCTCGACGATCTGATGATCTCATTCTCGGTCCCCGGCGGTGGCGTCGGCCCCCATATCGACCAGTATGATGTCTTTATCA
TCCAGGGCAGCGGGCGGAGACGCTGGCGTGTCGGCGAGAAAGGACAGCGCCGTCAGCACTGCCCGCACCCGGACCTGCTG
CAGGTCGATCCCTTTGATGCCATCATCGACATCGAGCTGTCACCGGGCGATATCCTGTATATCCCGCCCCACTTCCCTCA
TGAAGGGTATGCGCTGGAGAACGCCCTCAACTACTCGGTGGGTTTCCGGGCGCCCAACGCCCGCGAGCTGATCAGTGGCT
TTGCCGATCATATGTTGGCCCACGATCTCGGCGGCAACCACTATGTCGATCCACAATTGGCGCAACGCGACAATCCGGCG
GAGATCCTGCCGCAGGAGCTGGACGCCCTGCGCACCATGATGGTGGCCCAGCTCAACGACGGCGACAGCTTCCAGCGCTG
GTTCGGCGAGTTTATCAGCCAGTCTCGCCACGAGCTGGACATCGCTCCGCCGGAGCCGCCCTATCAGGCCGGAGAGGTCT
ATGAGCTGCTGCAGGCGGGCGAGGTACTGGAGCGTCTGGGGGGAATTCGGGTGCTGCGGATCGCGGAGCGCTGCTATATC
AACGGGGAACCCCTCGACAGTGAGAACGCCGCCGCGCTCGATACGCTGGCGCGTCATACCTGCCTGAACGCCACCGCACT
GGGCTGCGCGCTGGACGATCCCGCCTTCCTGACCGACCTGACCGGGCTGATTAACAGCGGGTACTGGTTCTTCCAGGACT
GA

Upstream 100 bases:

>100_bases
TTATACTGGGCAGAGTCCCGCCACGCGATGTAACCCGATATCTCCTGCCGCGGCGGAACACCGCGGCCTCTGTGCCCACC
ACCATCACAGGACACTCACC

Downstream 100 bases:

>100_bases
ACATACGCGTAAGGCAGCGCGACCGTAAGCGGGGGCGCTGCCGATGCGGGCATTACTGACCGTCGGAGGGAAAGCCGCAG
CGGATCAGCAGTTGCTGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MHYQLDLDWQDFLQNYWQKRPLVIRHGFKDFIDPLSPDELAGLAMEQEVDSRLVCRDDGQWQVSHGPFTSYDHLGETNWS
LLVQAVDHWHTPAAALMRPFRHLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGSGRRRWRVGEKGQRRQHCPHPDLL
QVDPFDAIIDIELSPGDILYIPPHFPHEGYALENALNYSVGFRAPNARELISGFADHMLAHDLGGNHYVDPQLAQRDNPA
EILPQELDALRTMMVAQLNDGDSFQRWFGEFISQSRHELDIAPPEPPYQAGEVYELLQAGEVLERLGGIRVLRIAERCYI
NGEPLDSENAAALDTLARHTCLNATALGCALDDPAFLTDLTGLINSGYWFFQD

Sequences:

>Translated_373_residues
MHYQLDLDWQDFLQNYWQKRPLVIRHGFKDFIDPLSPDELAGLAMEQEVDSRLVCRDDGQWQVSHGPFTSYDHLGETNWS
LLVQAVDHWHTPAAALMRPFRHLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGSGRRRWRVGEKGQRRQHCPHPDLL
QVDPFDAIIDIELSPGDILYIPPHFPHEGYALENALNYSVGFRAPNARELISGFADHMLAHDLGGNHYVDPQLAQRDNPA
EILPQELDALRTMMVAQLNDGDSFQRWFGEFISQSRHELDIAPPEPPYQAGEVYELLQAGEVLERLGGIRVLRIAERCYI
NGEPLDSENAAALDTLARHTCLNATALGCALDDPAFLTDLTGLINSGYWFFQD
>Mature_373_residues
MHYQLDLDWQDFLQNYWQKRPLVIRHGFKDFIDPLSPDELAGLAMEQEVDSRLVCRDDGQWQVSHGPFTSYDHLGETNWS
LLVQAVDHWHTPAAALMRPFRHLPDWRLDDLMISFSVPGGGVGPHIDQYDVFIIQGSGRRRWRVGEKGQRRQHCPHPDLL
QVDPFDAIIDIELSPGDILYIPPHFPHEGYALENALNYSVGFRAPNARELISGFADHMLAHDLGGNHYVDPQLAQRDNPA
EILPQELDALRTMMVAQLNDGDSFQRWFGEFISQSRHELDIAPPEPPYQAGEVYELLQAGEVLERLGGIRVLRIAERCYI
NGEPLDSENAAALDTLARHTCLNATALGCALDDPAFLTDLTGLINSGYWFFQD

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=372, Percent_Identity=72.5806451612903, Blast_Score=572, Evalue=1e-164,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42339; Mature: 42339

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYQLDLDWQDFLQNYWQKRPLVIRHGFKDFIDPLSPDELAGLAMEQEVDSRLVCRDDGQ
CCEEECCCHHHHHHHHHHCCCEEEECCHHHHHCCCCHHHHHHHHHHHHHCCEEEECCCCC
WQVSHGPFTSYDHLGETNWSLLVQAVDHWHTPAAALMRPFRHLPDWRLDDLMISFSVPGG
EEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCC
GVGPHIDQYDVFIIQGSGRRRWRVGEKGQRRQHCPHPDLLQVDPFDAIIDIELSPGDILY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHCCCCCCCCEEECCCCEEEEEEECCCCEEE
IPPHFPHEGYALENALNYSVGFRAPNARELISGFADHMLAHDLGGNHYVDPQLAQRDNPA
ECCCCCCCCEEHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCH
EILPQELDALRTMMVAQLNDGDSFQRWFGEFISQSRHELDIAPPEPPYQAGEVYELLQAG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHH
EVLERLGGIRVLRIAERCYINGEPLDSENAAALDTLARHTCLNATALGCALDDPAFLTDL
HHHHHHCCEEEEEEHHHHEECCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHH
TGLINSGYWFFQD
HHHHHCCEEEECC
>Mature Secondary Structure
MHYQLDLDWQDFLQNYWQKRPLVIRHGFKDFIDPLSPDELAGLAMEQEVDSRLVCRDDGQ
CCEEECCCHHHHHHHHHHCCCEEEECCHHHHHCCCCHHHHHHHHHHHHHCCEEEECCCCC
WQVSHGPFTSYDHLGETNWSLLVQAVDHWHTPAAALMRPFRHLPDWRLDDLMISFSVPGG
EEECCCCCCCHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCC
GVGPHIDQYDVFIIQGSGRRRWRVGEKGQRRQHCPHPDLLQVDPFDAIIDIELSPGDILY
CCCCCCCCEEEEEEECCCCCCCCCCCCCCHHCCCCCCCCEEECCCCEEEEEEECCCCEEE
IPPHFPHEGYALENALNYSVGFRAPNARELISGFADHMLAHDLGGNHYVDPQLAQRDNPA
ECCCCCCCCEEHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCH
EILPQELDALRTMMVAQLNDGDSFQRWFGEFISQSRHELDIAPPEPPYQAGEVYELLQAG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHH
EVLERLGGIRVLRIAERCYINGEPLDSENAAALDTLARHTCLNATALGCALDDPAFLTDL
HHHHHHCCEEEEEEHHHHEECCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHH
TGLINSGYWFFQD
HHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]