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The map label for this gene is yhcK [H]

Identifier: 238920210

GI number: 238920210

Start: 2216673

End: 2217728

Strand: Direct

Name: yhcK [H]

Synonym: NT01EI_2319

Alternate gene names: 238920210

Gene position: 2216673-2217728 (Clockwise)

Preceding gene: 238920209

Following gene: 238920211

Centisome position: 58.15

GC content: 60.89

Gene sequence:

>1056_bases
ATGAGCCCGCTGCAATCCCTCGACGTTCTGTATATCAACGCCTGCGTTACCTACGCCACGCTCTCCGTCAGCTATTTCGC
ACTGAGTAAACAGGGGGCCCTGGGGCCCGCATCGCCGCTCTCCGGCCGTATTCTGTGGGGGATGGTTGCCGGCCTGCTCT
CCTGGTATCTGACCGGCAGCAAAATCTACTTTACCGCACAGATCCACTACACCTTCGAAATCGTCCCCATGTTGCTGGTC
ACCTTCTTCGGCGGCTGGTGCGCCGGCCTGACTGCCTGGCTGCTCAACTTCATCACCACCGGCGGCTTTGTCCTCGACAA
CCTGTTTATCGGTATGATGCTGGCACCGGTGCTGCTGGCGCGTGTGTGGCGGCGCAATACCCTGCGTACCTTTATCCTGT
GCATTTCGCTGGTGACGCTGTTCCGCCTGCTGATCGTTATCCCCTACGTGACCCGGCGTATCTATCTGCTGGACGTGCTG
CTGCATCAAACCATCTCCTATTTCTGCCTGCTGGTCTGTTACCAGACCCTGGCCCTCAAGCAGCGCAGCATCAGCGCCTA
TTTCACCCTGAGCGAGTCGGCCCTGCGCGACCAGCTGACCCAGACCAATAACCGCCAAGGGCTCCAGCAGCAGATCCTGC
GTCTGGAACACAGCCGCAGCGCCTGCTGCATCGCCATGATCGATATCGATAACTTTAAGCAAATCAACGATCGCTACGGC
CATCTGTGCGGCGACCGGGTTTTGACCGCCATCGCCGCCATCGCCTCACAGACCCTGCAGCCCCGGGACTACATGGCCCG
TTTCGGCGGAGAGGAGTTTGTCATCCTGTTTCCCGGGAAGACACTCGAGCGGGCCAACGCGCGCTGCGAGCAAATCCGCC
AGGCCATCTGCGCTACGCCCCTCTACCTTTGCCATGACCAGCAAATCCGGGCGAGCGCCTCCTTCGGCCTCAGCTATTTC
GACGGTCGCGACAGCCTGCAACAGGCCATCGCACGGGCCGACGGCGCCCTGTACCGCGCCAAGCGCCGCGGTAAAAACCG
TGTTGAGTGCGCCTGA

Upstream 100 bases:

>100_bases
ACTTTACATTCCCCCGGCGACGATTCCGCCCGCGCTTTTCGGCCGCCAGCCTCCCTGTGCTAAACTGGAAAAAAATATTG
ATTTTGCGCCCGTAGTCCTG

Downstream 100 bases:

>100_bases
CGCACGGCGCAGGCGCCATCGTTTGCGCAGATGTGCGCCAGTTACCTGCGCCAATCGCCCGTGCCGCTAGGTTTAACGTC
ACGTTTATGGCATGATCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MSPLQSLDVLYINACVTYATLSVSYFALSKQGALGPASPLSGRILWGMVAGLLSWYLTGSKIYFTAQIHYTFEIVPMLLV
TFFGGWCAGLTAWLLNFITTGGFVLDNLFIGMMLAPVLLARVWRRNTLRTFILCISLVTLFRLLIVIPYVTRRIYLLDVL
LHQTISYFCLLVCYQTLALKQRSISAYFTLSESALRDQLTQTNNRQGLQQQILRLEHSRSACCIAMIDIDNFKQINDRYG
HLCGDRVLTAIAAIASQTLQPRDYMARFGGEEFVILFPGKTLERANARCEQIRQAICATPLYLCHDQQIRASASFGLSYF
DGRDSLQQAIARADGALYRAKRRGKNRVECA

Sequences:

>Translated_351_residues
MSPLQSLDVLYINACVTYATLSVSYFALSKQGALGPASPLSGRILWGMVAGLLSWYLTGSKIYFTAQIHYTFEIVPMLLV
TFFGGWCAGLTAWLLNFITTGGFVLDNLFIGMMLAPVLLARVWRRNTLRTFILCISLVTLFRLLIVIPYVTRRIYLLDVL
LHQTISYFCLLVCYQTLALKQRSISAYFTLSESALRDQLTQTNNRQGLQQQILRLEHSRSACCIAMIDIDNFKQINDRYG
HLCGDRVLTAIAAIASQTLQPRDYMARFGGEEFVILFPGKTLERANARCEQIRQAICATPLYLCHDQQIRASASFGLSYF
DGRDSLQQAIARADGALYRAKRRGKNRVECA
>Mature_350_residues
SPLQSLDVLYINACVTYATLSVSYFALSKQGALGPASPLSGRILWGMVAGLLSWYLTGSKIYFTAQIHYTFEIVPMLLVT
FFGGWCAGLTAWLLNFITTGGFVLDNLFIGMMLAPVLLARVWRRNTLRTFILCISLVTLFRLLIVIPYVTRRIYLLDVLL
HQTISYFCLLVCYQTLALKQRSISAYFTLSESALRDQLTQTNNRQGLQQQILRLEHSRSACCIAMIDIDNFKQINDRYGH
LCGDRVLTAIAAIASQTLQPRDYMARFGGEEFVILFPGKTLERANARCEQIRQAICATPLYLCHDQQIRASASFGLSYFD
GRDSLQQAIARADGALYRAKRRGKNRVECA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=35.3932584269663, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=34.3949044585987, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=33.9506172839506, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI87081881, Length=126, Percent_Identity=39.6825396825397, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1786584, Length=190, Percent_Identity=33.1578947368421, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787802, Length=167, Percent_Identity=31.7365269461078, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=31.9018404907975, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787056, Length=169, Percent_Identity=28.4023668639053, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=166, Percent_Identity=31.9277108433735, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081974, Length=165, Percent_Identity=29.6969696969697, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=132, Percent_Identity=37.8787878787879, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081977, Length=203, Percent_Identity=28.0788177339901, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=30.9677419354839, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 39540; Mature: 39409

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLQSLDVLYINACVTYATLSVSYFALSKQGALGPASPLSGRILWGMVAGLLSWYLTGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
KIYFTAQIHYTFEIVPMLLVTFFGGWCAGLTAWLLNFITTGGFVLDNLFIGMMLAPVLLA
EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RVWRRNTLRTFILCISLVTLFRLLIVIPYVTRRIYLLDVLLHQTISYFCLLVCYQTLALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRSISAYFTLSESALRDQLTQTNNRQGLQQQILRLEHSRSACCIAMIDIDNFKQINDRYG
HHCCHHEEEECHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHH
HLCGDRVLTAIAAIASQTLQPRDYMARFGGEEFVILFPGKTLERANARCEQIRQAICATP
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCC
LYLCHDQQIRASASFGLSYFDGRDSLQQAIARADGALYRAKRRGKNRVECA
HHEECCHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SPLQSLDVLYINACVTYATLSVSYFALSKQGALGPASPLSGRILWGMVAGLLSWYLTGS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
KIYFTAQIHYTFEIVPMLLVTFFGGWCAGLTAWLLNFITTGGFVLDNLFIGMMLAPVLLA
EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RVWRRNTLRTFILCISLVTLFRLLIVIPYVTRRIYLLDVLLHQTISYFCLLVCYQTLALK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRSISAYFTLSESALRDQLTQTNNRQGLQQQILRLEHSRSACCIAMIDIDNFKQINDRYG
HHCCHHEEEECHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHH
HLCGDRVLTAIAAIASQTLQPRDYMARFGGEEFVILFPGKTLERANARCEQIRQAICATP
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCC
LYLCHDQQIRASASFGLSYFDGRDSLQQAIARADGALYRAKRRGKNRVECA
HHEECCHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]