| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920159
Identifier: 238920159
GI number: 238920159
Start: 2171873
End: 2172424
Strand: Direct
Name: 238920159
Synonym: NT01EI_2265
Alternate gene names: NA
Gene position: 2171873-2172424 (Clockwise)
Preceding gene: 238920158
Following gene: 238920160
Centisome position: 56.97
GC content: 61.23
Gene sequence:
>552_bases ATGAACATTGATGCCATTTTCGATCAATTGCTGGGCAAAGAGGGGAATTATGTCGATCACCCCAGCGATAAGGGCGGTCC CACCAACTGGGGTATCACCGAAAAAACCGCCCGCGCGCATGGCTACACCGGTGATATGCGTTACCTGACCCGCGGGCAGG CCCTGGAGATCTACCGTGCCGACTATTGGCGCGCGCCCCGCTTCGATCAGGTCTATGCCCTGAGCCCCCCGCTGGCCGAG GAGTTACTGGATACGGGGGTCAACATGGGGCCGTCCGTCCCCTCTGCCTGGCTACAACGCTGGCTTAACGCCTTCAACCA GCGCGGAAAACTGTATCCGGATTTACAGGCCGATGGCAGCATCGGTCCCCGTACCCTCTCCGCTCTGCAGGCTTACCTGA ACGCCCGCGGCGACGAGGGCGCCACGGTTTTGCTCTCTGCGCTGAACTGCAGCCAGGGAGCCCGCTACCTTGAGATCACC GAGCGGGATCAAGCCCAGGAAGACTTTACCTATGGCTGGATGCGGGCACGGGTGGCCACGCCCCAAACCTAA
Upstream 100 bases:
>100_bases GCCGCACTGGGGGTTGCCGGGTACCAGTGCATAGAAATCTATCTGCGCCGCTGGTTACGGCGGCGCGACCGGGATAAACG CTAACCGTACGAGGTATTTC
Downstream 100 bases:
>100_bases TAACGCCACCGATTATCCCAGGAGTCTCCTATGACGGAAAAAACGCAGTACAACGATGCACCCGGCCTGATCACCCTGCA GATCGGTGAGCAGGAGCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MNIDAIFDQLLGKEGNYVDHPSDKGGPTNWGITEKTARAHGYTGDMRYLTRGQALEIYRADYWRAPRFDQVYALSPPLAE ELLDTGVNMGPSVPSAWLQRWLNAFNQRGKLYPDLQADGSIGPRTLSALQAYLNARGDEGATVLLSALNCSQGARYLEIT ERDQAQEDFTYGWMRARVATPQT
Sequences:
>Translated_183_residues MNIDAIFDQLLGKEGNYVDHPSDKGGPTNWGITEKTARAHGYTGDMRYLTRGQALEIYRADYWRAPRFDQVYALSPPLAE ELLDTGVNMGPSVPSAWLQRWLNAFNQRGKLYPDLQADGSIGPRTLSALQAYLNARGDEGATVLLSALNCSQGARYLEIT ERDQAQEDFTYGWMRARVATPQT >Mature_183_residues MNIDAIFDQLLGKEGNYVDHPSDKGGPTNWGITEKTARAHGYTGDMRYLTRGQALEIYRADYWRAPRFDQVYALSPPLAE ELLDTGVNMGPSVPSAWLQRWLNAFNQRGKLYPDLQADGSIGPRTLSALQAYLNARGDEGATVLLSALNCSQGARYLEIT ERDQAQEDFTYGWMRARVATPQT
Specific function: Unknown
COG id: COG3926
COG function: function code R; Putative secretion activating protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20448; Mature: 20448
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIDAIFDQLLGKEGNYVDHPSDKGGPTNWGITEKTARAHGYTGDMRYLTRGQALEIYRA CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHCCCEEEEEHH DYWRAPRFDQVYALSPPLAEELLDTGVNMGPSVPSAWLQRWLNAFNQRGKLYPDLQADGS CCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC IGPRTLSALQAYLNARGDEGATVLLSALNCSQGARYLEITERDQAQEDFTYGWMRARVAT CCHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHEEECC PQT CCC >Mature Secondary Structure MNIDAIFDQLLGKEGNYVDHPSDKGGPTNWGITEKTARAHGYTGDMRYLTRGQALEIYRA CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHCCCEEEEEHH DYWRAPRFDQVYALSPPLAEELLDTGVNMGPSVPSAWLQRWLNAFNQRGKLYPDLQADGS CCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC IGPRTLSALQAYLNARGDEGATVLLSALNCSQGARYLEITERDQAQEDFTYGWMRARVAT CCHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHEEECC PQT CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA