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The map label for this gene is cbiD

Identifier: 238920085

GI number: 238920085

Start: 2114361

End: 2115500

Strand: Reverse

Name: cbiD

Synonym: NT01EI_2190

Alternate gene names: 238920085

Gene position: 2115500-2114361 (Counterclockwise)

Preceding gene: 238920086

Following gene: 238920084

Centisome position: 55.49

GC content: 66.93

Gene sequence:

>1140_bases
ATGAGCGATCGGGCCTTTGATACGCCGGTGTGGCACCACGGAAAGGCGCTGCGCAAGGGCTATACCACCGGCTCCTGCGC
CACCGCGGCCGCCAAGGTCGCCGCGCTGATGGCGCTGCGCCAGCAGCCGATCCACCAGATCGCCATCGTGACCCCCTCCG
GCGTCACGCTGAACCTGAGCGTGGAATCCCCGCATATCGAAGGGGAGCAGGCCATCGCCGCCATTCGCAAAGACGGCGGC
GATGATGTCGATGCGACCCACGGTATGCTGATTTTCGCGCGGGTCACGCTCAACGACAGCGGCGCGATCTCGCTGTCGGG
GGGCGAGGGGATCGGCACCGTGACGCGCAAGGGCATTGGCCTGCCCATCGGCAGCGCGGCGATCAACCGCACGCCCCGCC
ATACCATTGAGTCGGCGGTGCGCGAGGCGATCGGCCCGACGCGCGGCGCCGCGGTCGAGATCTTTGCGCCGGAGGGCGTC
GCGCGGGCGCAGAAAACCTATAACGCCCGCCTGGGTATCCTGGGCGGCATCTCGATCATCGGCACCACGGGCATCGTGAC
GCCGATGTCGGAGGAGAGCTGGAAGCGTTCGCTGGCGCTGACCCTGGAGATGAAGCGCGCCGCCGGGATGACACGGGTGG
TGCTGGTGCCGGGCAACCACGGCGAGCGCTTTGTGCGGGAGCAGATGGGGATCGCGGCCGATGCGGTGGTGACGATGAGC
AACTTCGTCGGCTATATGGTCGAGGAGGCGGTGCGTCTGGGGTTTCGCCAGATCGTGCTGGTCGGCCACCCGGGCAAGCT
GATCAAGGTCGCCGCCGGGATCTTCCACACCCACAGCCATATGGCCGATGCGCGCATGGAGACGCTGGTGGCGCATCTGG
CGCTGCTGGGCGCGCCGCTGGCGCTGCTGACGCGGGTGCGTGACTGCGACACGACCGAGGCGGCGATGGAGCATATCGAC
GCCTACGGCTTTCAGTCGCTGTATGACCATCTCGCCGCCCGTATCTGCCAGCGCGTGATAGAGCGGCTGCGTTTTACCCA
GAATCTGCCGATCTGCGACGCCATTCTGTTCTCGTTTGATAACCGGACGCTGGGCAGCAACCGCCCGGTCGCCGCCATCG
TGGAGGATCTGCGGTGTTGA

Upstream 100 bases:

>100_bases
ACAGCGGCTTGCCCGCCATTGCGGCGCTGGGGCGCAAGGGCGGCAGCAACGTGGCGGCGGCGATCGTTAACGCCGTGCTG
TACCACCTGCGGGGGGCAAC

Downstream 100 bases:

>100_bases
CGGTCGTGGGGGTGGGCCCCGCGGGCGTCCATCTGATAACTCCCGCGGCGCGCGATGCGATCGCGCAGGCGGAGTGCCTG
GTGGGCGGGGCGCGTCATTT

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSDRAFDTPVWHHGKALRKGYTTGSCATAAAKVAALMALRQQPIHQIAIVTPSGVTLNLSVESPHIEGEQAIAAIRKDGG
DDVDATHGMLIFARVTLNDSGAISLSGGEGIGTVTRKGIGLPIGSAAINRTPRHTIESAVREAIGPTRGAAVEIFAPEGV
ARAQKTYNARLGILGGISIIGTTGIVTPMSEESWKRSLALTLEMKRAAGMTRVVLVPGNHGERFVREQMGIAADAVVTMS
NFVGYMVEEAVRLGFRQIVLVGHPGKLIKVAAGIFHTHSHMADARMETLVAHLALLGAPLALLTRVRDCDTTEAAMEHID
AYGFQSLYDHLAARICQRVIERLRFTQNLPICDAILFSFDNRTLGSNRPVAAIVEDLRC

Sequences:

>Translated_379_residues
MSDRAFDTPVWHHGKALRKGYTTGSCATAAAKVAALMALRQQPIHQIAIVTPSGVTLNLSVESPHIEGEQAIAAIRKDGG
DDVDATHGMLIFARVTLNDSGAISLSGGEGIGTVTRKGIGLPIGSAAINRTPRHTIESAVREAIGPTRGAAVEIFAPEGV
ARAQKTYNARLGILGGISIIGTTGIVTPMSEESWKRSLALTLEMKRAAGMTRVVLVPGNHGERFVREQMGIAADAVVTMS
NFVGYMVEEAVRLGFRQIVLVGHPGKLIKVAAGIFHTHSHMADARMETLVAHLALLGAPLALLTRVRDCDTTEAAMEHID
AYGFQSLYDHLAARICQRVIERLRFTQNLPICDAILFSFDNRTLGSNRPVAAIVEDLRC
>Mature_378_residues
SDRAFDTPVWHHGKALRKGYTTGSCATAAAKVAALMALRQQPIHQIAIVTPSGVTLNLSVESPHIEGEQAIAAIRKDGGD
DVDATHGMLIFARVTLNDSGAISLSGGEGIGTVTRKGIGLPIGSAAINRTPRHTIESAVREAIGPTRGAAVEIFAPEGVA
RAQKTYNARLGILGGISIIGTTGIVTPMSEESWKRSLALTLEMKRAAGMTRVVLVPGNHGERFVREQMGIAADAVVTMSN
FVGYMVEEAVRLGFRQIVLVGHPGKLIKVAAGIFHTHSHMADARMETLVAHLALLGAPLALLTRVRDCDTTEAAMEHIDA
YGFQSLYDHLAARICQRVIERLRFTQNLPICDAILFSFDNRTLGSNRPVAAIVEDLRC

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_EDWI9 (C5BFT8)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002933600.1
- GeneID:   7961623
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_2190
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 40550; Mature: 40419

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRAFDTPVWHHGKALRKGYTTGSCATAAAKVAALMALRQQPIHQIAIVTPSGVTLNLS
CCCCCCCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEE
VESPHIEGEQAIAAIRKDGGDDVDATHGMLIFARVTLNDSGAISLSGGEGIGTVTRKGIG
ECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCHHHHCCCC
LPIGSAAINRTPRHTIESAVREAIGPTRGAAVEIFAPEGVARAQKTYNARLGILGGISII
CCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCCEEEEECHHEE
GTTGIVTPMSEESWKRSLALTLEMKRAAGMTRVVLVPGNHGERFVREQMGIAADAVVTMS
ECCCCCCCCCHHHHHHHHEEEEEEHHHCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHH
NFVGYMVEEAVRLGFRQIVLVGHPGKLIKVAAGIFHTHSHMADARMETLVAHLALLGAPL
HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
ALLTRVRDCDTTEAAMEHIDAYGFQSLYDHLAARICQRVIERLRFTQNLPICDAILFSFD
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
NRTLGSNRPVAAIVEDLRC
CCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SDRAFDTPVWHHGKALRKGYTTGSCATAAAKVAALMALRQQPIHQIAIVTPSGVTLNLS
CCCCCCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEE
VESPHIEGEQAIAAIRKDGGDDVDATHGMLIFARVTLNDSGAISLSGGEGIGTVTRKGIG
ECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCEEEECCCCCCCHHHHCCCC
LPIGSAAINRTPRHTIESAVREAIGPTRGAAVEIFAPEGVARAQKTYNARLGILGGISII
CCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCCEEEEECHHEE
GTTGIVTPMSEESWKRSLALTLEMKRAAGMTRVVLVPGNHGERFVREQMGIAADAVVTMS
ECCCCCCCCCHHHHHHHHEEEEEEHHHCCCEEEEEEECCCCHHHHHHHHCCHHHHHHHHH
NFVGYMVEEAVRLGFRQIVLVGHPGKLIKVAAGIFHTHSHMADARMETLVAHLALLGAPL
HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
ALLTRVRDCDTTEAAMEHIDAYGFQSLYDHLAARICQRVIERLRFTQNLPICDAILFSFD
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
NRTLGSNRPVAAIVEDLRC
CCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA