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The map label for this gene is pecT [H]

Identifier: 238920036

GI number: 238920036

Start: 2070273

End: 2071274

Strand: Direct

Name: pecT [H]

Synonym: NT01EI_2140

Alternate gene names: 238920036

Gene position: 2070273-2071274 (Clockwise)

Preceding gene: 238920034

Following gene: 238920037

Centisome position: 54.3

GC content: 47.7

Gene sequence:

>1002_bases
ATGGATGTCATGAAGTCCGGATCACACGTCATACCTGTTCAACCGACCGAAGGCATCACCGAGATGATGAAAGGTCAAAC
TATGATACAAATACAACGTCCTATACCCAATTTAGAATTGGATCTGTTACGCACTTTCATTGCAGTAGTTGAGGGGAATA
GCTTTGCCGCGGCTGCCGAATCAGTACATCGTACGCAGTCTGCTATCAGTCAACAAATGCAGCGTCTGGAGTCTCTCATC
GGTAAGGAGCTTTTTGTCCGTAGCGGCCGAGGTAAGTCATTGACTGAGCATGGCGTGAAAATGCTGGGTTATGCCCGCCG
TATCTTAAACCTAAACGACGAAGCATGCCTTTCATTAATGTACGACGATGTTGATGGCGTGCTGCGTATCGGTTCACCGG
ATGATACGGCCAACACAATCCTACCGGAATTACTGGCGCGCTTTTCGAAGGCTTATCCACGACTGATCATCGAAATCGTG
GTTAAACGCAGTCCTTTCCTGATGGAAGCGCTCAAAAATGATGAGATAGATATGGCAATCTCTACGACAGAATGCACTGA
TTATTCAGGGTTTATTTTGCGTTCTTCACCTTCGCTATGGTTCTGTGGCCTCAATTACAAGTTTGACGCCGACACGCCAC
TGCCGCTGGTCTCGCTGGATGAACCCAGTACCTACCGTAACATGGCTATCAACCACCTGGAGCGCTTTGGTATTCCCTGG
CGGATTGCTTATACCGCGACCACCCTATCCGGTGCCAGGGCCGCCGTTGCGGCCGGACTTGGGGTAATGGCGCGATCCAT
TGAGTTATTTGGCGATGATTTATGTATTTTAGGGGAGAGCGAAGGGCTCCCCAAACTACCGAATATTAAATTTAACTTAT
ATATCCGCAGAAATAACCCACCCAAGGCTGCTAAAGTTTTATTCGAATCTCTGTATCAGGAAAATTTTTCACCTGAGCGG
CCTTATGTCAATGCTGTGATTTCCAAGGAGACATTATGCTGA

Upstream 100 bases:

>100_bases
AAGCGTAGGGACACGCTGGGCAGCGATAGCGTAGGTGACCAGCAGGCCTCTTACCGTGGCGATATACGCGGCCGGAGTTC
AGCGGGGACAGTGAGCGGCG

Downstream 100 bases:

>100_bases
CTCAGTTTTCTGGTATTTTTCCCTATCTGGTCTCACCGGTCGATAATCATACTGGCAGAGTATTGGAGCACCCCCTGCGC
AAGTTGGTTGAACATCTGAT

Product: HTH-type transcriptional regulator PecT

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MDVMKSGSHVIPVQPTEGITEMMKGQTMIQIQRPIPNLELDLLRTFIAVVEGNSFAAAAESVHRTQSAISQQMQRLESLI
GKELFVRSGRGKSLTEHGVKMLGYARRILNLNDEACLSLMYDDVDGVLRIGSPDDTANTILPELLARFSKAYPRLIIEIV
VKRSPFLMEALKNDEIDMAISTTECTDYSGFILRSSPSLWFCGLNYKFDADTPLPLVSLDEPSTYRNMAINHLERFGIPW
RIAYTATTLSGARAAVAAGLGVMARSIELFGDDLCILGESEGLPKLPNIKFNLYIRRNNPPKAAKVLFESLYQENFSPER
PYVNAVISKETLC

Sequences:

>Translated_333_residues
MDVMKSGSHVIPVQPTEGITEMMKGQTMIQIQRPIPNLELDLLRTFIAVVEGNSFAAAAESVHRTQSAISQQMQRLESLI
GKELFVRSGRGKSLTEHGVKMLGYARRILNLNDEACLSLMYDDVDGVLRIGSPDDTANTILPELLARFSKAYPRLIIEIV
VKRSPFLMEALKNDEIDMAISTTECTDYSGFILRSSPSLWFCGLNYKFDADTPLPLVSLDEPSTYRNMAINHLERFGIPW
RIAYTATTLSGARAAVAAGLGVMARSIELFGDDLCILGESEGLPKLPNIKFNLYIRRNNPPKAAKVLFESLYQENFSPER
PYVNAVISKETLC
>Mature_333_residues
MDVMKSGSHVIPVQPTEGITEMMKGQTMIQIQRPIPNLELDLLRTFIAVVEGNSFAAAAESVHRTQSAISQQMQRLESLI
GKELFVRSGRGKSLTEHGVKMLGYARRILNLNDEACLSLMYDDVDGVLRIGSPDDTANTILPELLARFSKAYPRLIIEIV
VKRSPFLMEALKNDEIDMAISTTECTDYSGFILRSSPSLWFCGLNYKFDADTPLPLVSLDEPSTYRNMAINHLERFGIPW
RIAYTATTLSGARAAVAAGLGVMARSIELFGDDLCILGESEGLPKLPNIKFNLYIRRNNPPKAAKVLFESLYQENFSPER
PYVNAVISKETLC

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=284, Percent_Identity=50, Blast_Score=291, Evalue=4e-80,
Organism=Escherichia coli, GI87081904, Length=173, Percent_Identity=30.0578034682081, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787806, Length=143, Percent_Identity=30.0699300699301, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788297, Length=141, Percent_Identity=31.2056737588652, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788481, Length=149, Percent_Identity=29.5302013422819, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI145693105, Length=244, Percent_Identity=25.8196721311475, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=140, Percent_Identity=36.4285714285714, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790208, Length=146, Percent_Identity=28.7671232876712, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788296, Length=213, Percent_Identity=27.2300469483568, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48994962, Length=148, Percent_Identity=28.3783783783784, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87082132, Length=144, Percent_Identity=31.25, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37055; Mature: 37055

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVMKSGSHVIPVQPTEGITEMMKGQTMIQIQRPIPNLELDLLRTFIAVVEGNSFAAAAE
CCCCCCCCEEEECCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH
SVHRTQSAISQQMQRLESLIGKELFVRSGRGKSLTEHGVKMLGYARRILNLNDEACLSLM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
YDDVDGVLRIGSPDDTANTILPELLARFSKAYPRLIIEIVVKRSPFLMEALKNDEIDMAI
HHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEE
STTECTDYSGFILRSSPSLWFCGLNYKFDADTPLPLVSLDEPSTYRNMAINHLERFGIPW
EECCCCCCCCEEEECCCCEEEEECCEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCE
RIAYTATTLSGARAAVAAGLGVMARSIELFGDDLCILGESEGLPKLPNIKFNLYIRRNNP
EEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEECCC
PKAAKVLFESLYQENFSPERPYVNAVISKETLC
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MDVMKSGSHVIPVQPTEGITEMMKGQTMIQIQRPIPNLELDLLRTFIAVVEGNSFAAAAE
CCCCCCCCEEEECCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHH
SVHRTQSAISQQMQRLESLIGKELFVRSGRGKSLTEHGVKMLGYARRILNLNDEACLSLM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
YDDVDGVLRIGSPDDTANTILPELLARFSKAYPRLIIEIVVKRSPFLMEALKNDEIDMAI
HHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEE
STTECTDYSGFILRSSPSLWFCGLNYKFDADTPLPLVSLDEPSTYRNMAINHLERFGIPW
EECCCCCCCCEEEECCCCEEEEECCEEECCCCCCCEEECCCCCHHHHHHHHHHHHCCCCE
RIAYTATTLSGARAAVAAGLGVMARSIELFGDDLCILGESEGLPKLPNIKFNLYIRRNNP
EEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEEECCC
PKAAKVLFESLYQENFSPERPYVNAVISKETLC
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]