| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919927
Identifier: 238919927
GI number: 238919927
Start: 1956023
End: 1956961
Strand: Reverse
Name: 238919927
Synonym: NT01EI_2031
Alternate gene names: NA
Gene position: 1956961-1956023 (Counterclockwise)
Preceding gene: 238919928
Following gene: 238919926
Centisome position: 51.33
GC content: 56.44
Gene sequence:
>939_bases ATGAGCATGATGCTGATGGCGATGGCCATGAAAATTAAGACAGGGAATCCTCTGCGCAAATTGGTGCTGCTGAAGCTGGC CGACAACGCCAACGATCAGGGCGAGTGCTGGCCGTCGATCCCGTATCTGGCGGCGACCTGCGAGATGGCCGAGCGTTCGG TGCAGCACCATATCAAATGGCTGCATGAGCAGGGCTTTTTGTGGGTGGAGCCGCGCAAGAGCAAAAATGGCGGTCACCAG TCGAATATTTATCATCTGACCCTGGAAAAGCGCTTACAGATGCCGCCGGATGAGGATGAAAAGGGCGATCTGCCTCCGGC CGAAAATCAGGAAAAAAAGGGTGCTGCGCAGGGGGCGGGATCAGCCGGTGCAAATGGTGCGTCTTTGTCTGAGGTGCCAG TGCAACACATACGCCAGGGTTTGTCGTTTGATTCACTAGGGGTGGAGCAGCCATTGCACCCAGAACCTATCATTAAGAAC CTATCATTAGAACCTATACCCCCCTTACCCCCCAACAACAGCGAATGCGTTGAGCCCGACAAGGACAAAACCGATCGGGG AAAACCGGATTGGACAGCGCCCGATCGACACTATCGCAAACCCGATAATCCTGACGCCGATCACCCAGAACCGGAAAATC TCACCCGACGACCTGCTGAACGTATGGACTATGGCGCTTATCTGGCGGCCTACAACGCGCTGGTGGGCGACAGGCTCCCC CATGCGGTGACCGTCAACGAGGAGCGTAAGCGTAAACTGCGTTCGCTGGTGAAATCGTTGGCGACACCGAATCTGGAGGG CTTCCGGGCCTATGTCTCGGCGTTTCTCGACCATGCCAAGCCGTTTTACTTTGGCTTCGGCGATGCGGGCTGGATCGCCG ATTTTGATTACCTGCTGCGCCAGAAAACCCTGACCCGGGTACGGGAGGGGACACTGTGA
Upstream 100 bases:
>100_bases GCGGGCCTATGTCGAGTGCCGCCATGTCGCGGCATCGGTTGACTGCGCCCGTCGTTTGGCGATGCGAATTTCCACAGTGA CGAAAAACGGTTGGTGACCT
Downstream 100 bases:
>100_bases ACGCCAATCTCCAGTACCTGGAGTCCAGTGTGATCGGTGGCCTGCTGCTGGGTGGCCTGACACCGGCTGCGCAGGAGGTG CTGGCGTCGCTGGAGCCTGC
Product: replication of DNA
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MSMMLMAMAMKIKTGNPLRKLVLLKLADNANDQGECWPSIPYLAATCEMAERSVQHHIKWLHEQGFLWVEPRKSKNGGHQ SNIYHLTLEKRLQMPPDEDEKGDLPPAENQEKKGAAQGAGSAGANGASLSEVPVQHIRQGLSFDSLGVEQPLHPEPIIKN LSLEPIPPLPPNNSECVEPDKDKTDRGKPDWTAPDRHYRKPDNPDADHPEPENLTRRPAERMDYGAYLAAYNALVGDRLP HAVTVNEERKRKLRSLVKSLATPNLEGFRAYVSAFLDHAKPFYFGFGDAGWIADFDYLLRQKTLTRVREGTL
Sequences:
>Translated_312_residues MSMMLMAMAMKIKTGNPLRKLVLLKLADNANDQGECWPSIPYLAATCEMAERSVQHHIKWLHEQGFLWVEPRKSKNGGHQ SNIYHLTLEKRLQMPPDEDEKGDLPPAENQEKKGAAQGAGSAGANGASLSEVPVQHIRQGLSFDSLGVEQPLHPEPIIKN LSLEPIPPLPPNNSECVEPDKDKTDRGKPDWTAPDRHYRKPDNPDADHPEPENLTRRPAERMDYGAYLAAYNALVGDRLP HAVTVNEERKRKLRSLVKSLATPNLEGFRAYVSAFLDHAKPFYFGFGDAGWIADFDYLLRQKTLTRVREGTL >Mature_311_residues SMMLMAMAMKIKTGNPLRKLVLLKLADNANDQGECWPSIPYLAATCEMAERSVQHHIKWLHEQGFLWVEPRKSKNGGHQS NIYHLTLEKRLQMPPDEDEKGDLPPAENQEKKGAAQGAGSAGANGASLSEVPVQHIRQGLSFDSLGVEQPLHPEPIIKNL SLEPIPPLPPNNSECVEPDKDKTDRGKPDWTAPDRHYRKPDNPDADHPEPENLTRRPAERMDYGAYLAAYNALVGDRLPH AVTVNEERKRKLRSLVKSLATPNLEGFRAYVSAFLDHAKPFYFGFGDAGWIADFDYLLRQKTLTRVREGTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35013; Mature: 34882
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMMLMAMAMKIKTGNPLRKLVLLKLADNANDQGECWPSIPYLAATCEMAERSVQHHIKW CHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LHEQGFLWVEPRKSKNGGHQSNIYHLTLEKRLQMPPDEDEKGDLPPAENQEKKGAAQGAG HHHCCCEEECCCCCCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCC SAGANGASLSEVPVQHIRQGLSFDSLGVEQPLHPEPIIKNLSLEPIPPLPPNNSECVEPD CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC KDKTDRGKPDWTAPDRHYRKPDNPDADHPEPENLTRRPAERMDYGAYLAAYNALVGDRLP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCC HAVTVNEERKRKLRSLVKSLATPNLEGFRAYVSAFLDHAKPFYFGFGDAGWIADFDYLLR CEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH QKTLTRVREGTL HHHHHHHHHCCC >Mature Secondary Structure SMMLMAMAMKIKTGNPLRKLVLLKLADNANDQGECWPSIPYLAATCEMAERSVQHHIKW HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LHEQGFLWVEPRKSKNGGHQSNIYHLTLEKRLQMPPDEDEKGDLPPAENQEKKGAAQGAG HHHCCCEEECCCCCCCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCC SAGANGASLSEVPVQHIRQGLSFDSLGVEQPLHPEPIIKNLSLEPIPPLPPNNSECVEPD CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC KDKTDRGKPDWTAPDRHYRKPDNPDADHPEPENLTRRPAERMDYGAYLAAYNALVGDRLP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCC HAVTVNEERKRKLRSLVKSLATPNLEGFRAYVSAFLDHAKPFYFGFGDAGWIADFDYLLR CEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHH QKTLTRVREGTL HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA