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The map label for this gene is ynfD [H]

Identifier: 238919882

GI number: 238919882

Start: 1911132

End: 1911404

Strand: Direct

Name: ynfD [H]

Synonym: NT01EI_1986

Alternate gene names: 238919882

Gene position: 1911132-1911404 (Clockwise)

Preceding gene: 238919881

Following gene: 238919885

Centisome position: 50.13

GC content: 56.78

Gene sequence:

>273_bases
ATGCATAAACCTATCCTATTGTCCGCCCTGCTCTTGACACCGTTGATCTCTTATGCCGCCGCCGCCTCCTGCGAAAGCAT
TCGGGATGAGATTAGCCAGAAGATCGTGGCCAACGGCGTTCCGTCAGACGCCTTTACGCTGGAGATCGTCCCCAACGATC
AGGTACAGCAGGCGGGTGGTCAGGTCGTGGGTCACTGCGGTAACGACACACAGAAAATTATCTATATTCGTACCGACGGC
GCCGAGCCCGGCGCCTACGCGAATCCACGCTAA

Upstream 100 bases:

>100_bases
CGCAGCCTGAACGTCAACGCCTACTGGGAGCCAGGTACGCGCCGCTGCCTGGATCGCCAGAGTGGTCACCCGTTAACTCC
CTAGCCGACAGGTATCATAT

Downstream 100 bases:

>100_bases
GTAATTCAGGCCGCCGAAGGCGGCCTGAATTACTTCTCAACAACCTCTTCTCTCCGCTCCCGCAGCCCTATGCCCGCCGG
GATCAGCCATGCTGCCAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MHKPILLSALLLTPLISYAAAASCESIRDEISQKIVANGVPSDAFTLEIVPNDQVQQAGGQVVGHCGNDTQKIIYIRTDG
AEPGAYANPR

Sequences:

>Translated_90_residues
MHKPILLSALLLTPLISYAAAASCESIRDEISQKIVANGVPSDAFTLEIVPNDQVQQAGGQVVGHCGNDTQKIIYIRTDG
AEPGAYANPR
>Mature_90_residues
MHKPILLSALLLTPLISYAAAASCESIRDEISQKIVANGVPSDAFTLEIVPNDQVQQAGGQVVGHCGNDTQKIIYIRTDG
AEPGAYANPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081940, Length=56, Percent_Identity=66.0714285714286, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010595
- ProDom:   PD336997 [H]

Pfam domain/function: PF06649 DUF1161 [H]

EC number: NA

Molecular weight: Translated: 9533; Mature: 9533

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKPILLSALLLTPLISYAAAASCESIRDEISQKIVANGVPSDAFTLEIVPNDQVQQAGG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCC
QVVGHCGNDTQKIIYIRTDGAEPGAYANPR
EEEEECCCCCEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MHKPILLSALLLTPLISYAAAASCESIRDEISQKIVANGVPSDAFTLEIVPNDQVQQAGG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCC
QVVGHCGNDTQKIIYIRTDGAEPGAYANPR
EEEEECCCCCEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9868784 [H]