| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is yxlA [H]
Identifier: 238919800
GI number: 238919800
Start: 1832271
End: 1833665
Strand: Reverse
Name: yxlA [H]
Synonym: NT01EI_1904
Alternate gene names: 238919800
Gene position: 1833665-1832271 (Counterclockwise)
Preceding gene: 238919801
Following gene: 238919799
Centisome position: 48.1
GC content: 63.73
Gene sequence:
>1395_bases ATGAGTGAAACCAACGCCAACCCAGCCTGGCAAGTAGAGAATATCGGTATCGATCGGGTACCCGAACCGGCGTGCCGCAG TACCCCCAGCGAACTGTTCTGGATCTGGTCTGCCGCCAATATCGGTATTTTGGGCGTGGTCTACGGCGCGATCATCGTCA GCTTTGGCCTCTCCTTTGTACAGGCGATCCTGGCCGCCCTGCTCGGGGTGATGAGTTTCTGCCTGGTCGGCTACTTCAGC TTTGCCGGTAAACGCGGCCGCACCTCTACCCTGACCCTCTCCCGCGCCATCTTCGGCATCCGCGGTAACATCGCCCCCAC CCTGTTCAGCTGGATCAACCTGATGGGCTGGGAGGCGGTCAACATCATCACCGGAACCCTGACCCTGGCCGCGCTGCTGC AGGCCTGCGGCGTCCCGGGCGGACACGGTCTCACCCTGGTGTGCCTGGTGCTGTTTGCCGGCCTGGCCATCGCCGTCAGC CTGCTGGGACAGACGGCCGTCGCCGCCATCCAGCGCTGGTTTACCCGCATCTTCGGCACCATGACCCTGATCGTGGTCGG CTACATCCTGTTTACCACCCCCTGGCAAGCCGTACTGGCGATGCCCTCCGGCAGCTGGCTGACCGCCTTCCTACCGGCCG TGTCGGTGATCGCCGCCGGCACCGGTATCAGCTGGGCTATCGCCGGTGCCGACTACAGCCGCTACCAGTCCGCCAAGAGC AAAGAGAGCCACATCTTCGCCGCCGTCACCGGCGGCGCCGCGCTACCCCTGTGCCTGCTGATGCTGGCCGGGATCCTGCT CTCAGCCCGCCTGCCCGATCTGGCCGCGGCAGAAAACCCCATCGCCCTGATAGGCTCAGTGCTGCCGCGCTGGATGTCCA TCCCCTATCTGTTGGCCGCCACGGCGGGCATCGTGACCATCGCCGTGCTCAGCCTCTACTCCGCCAGCCTGAACCTGCTG ACCATCGGGGTTAAGATCCGCCAGATCTGGGCGGTAACGCTTGATGCCGCGATCGTACTGGGCATCGCCCTGTACATTCT GTTCGTCGCCGGCGACTTTATGGGGCCTTTCGTCGCCTTCCTGCTGTGCTGCGGCCTCTTCCTGGCCGCCTGGGAGGCCA TCTTCCTTGTCGACTATGTCTGCCTGCGTCGCCATCAAGGCTATAGCGACAGCCAGCTTTTCGATCTGCACGGCGATAAT GCCGGCGTACGCGTCGGCCCGCTGCTGTGCTGGCTGCTTGGCGCGCTCTGCGGGCTGATGGTGACCCGCACCGGCTTTAT CGACGGCCCGCTGGCCATCGGCATCTTTGCCGACTCCAGCCTGGGGCTGTTCGTCGCCTTCCTGATCAGCCTGCTTAGCT ACGCCCTGCTAATCAACATGAGTAAAAAAGCATGA
Upstream 100 bases:
>100_bases TTCTCTCCCTCCCGTGCGCAGCGCCGTCGTACGGCCGGGGATGATGCGACCCACCACGGTGTAAGCAGCACGAATCAATG ACAAAGGAGTGAATTGAATA
Downstream 100 bases:
>100_bases CAACGATGCGAACACCGCGCCCGGTCGCCGTCATCGGCGGCGCCGTCGGCGATCTGATCCTCAATCTGCCGCGTCTGCCG CTGCGGGGAGAGGACATGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 464; Mature: 463
Protein sequence:
>464_residues MSETNANPAWQVENIGIDRVPEPACRSTPSELFWIWSAANIGILGVVYGAIIVSFGLSFVQAILAALLGVMSFCLVGYFS FAGKRGRTSTLTLSRAIFGIRGNIAPTLFSWINLMGWEAVNIITGTLTLAALLQACGVPGGHGLTLVCLVLFAGLAIAVS LLGQTAVAAIQRWFTRIFGTMTLIVVGYILFTTPWQAVLAMPSGSWLTAFLPAVSVIAAGTGISWAIAGADYSRYQSAKS KESHIFAAVTGGAALPLCLLMLAGILLSARLPDLAAAENPIALIGSVLPRWMSIPYLLAATAGIVTIAVLSLYSASLNLL TIGVKIRQIWAVTLDAAIVLGIALYILFVAGDFMGPFVAFLLCCGLFLAAWEAIFLVDYVCLRRHQGYSDSQLFDLHGDN AGVRVGPLLCWLLGALCGLMVTRTGFIDGPLAIGIFADSSLGLFVAFLISLLSYALLINMSKKA
Sequences:
>Translated_464_residues MSETNANPAWQVENIGIDRVPEPACRSTPSELFWIWSAANIGILGVVYGAIIVSFGLSFVQAILAALLGVMSFCLVGYFS FAGKRGRTSTLTLSRAIFGIRGNIAPTLFSWINLMGWEAVNIITGTLTLAALLQACGVPGGHGLTLVCLVLFAGLAIAVS LLGQTAVAAIQRWFTRIFGTMTLIVVGYILFTTPWQAVLAMPSGSWLTAFLPAVSVIAAGTGISWAIAGADYSRYQSAKS KESHIFAAVTGGAALPLCLLMLAGILLSARLPDLAAAENPIALIGSVLPRWMSIPYLLAATAGIVTIAVLSLYSASLNLL TIGVKIRQIWAVTLDAAIVLGIALYILFVAGDFMGPFVAFLLCCGLFLAAWEAIFLVDYVCLRRHQGYSDSQLFDLHGDN AGVRVGPLLCWLLGALCGLMVTRTGFIDGPLAIGIFADSSLGLFVAFLISLLSYALLINMSKKA >Mature_463_residues SETNANPAWQVENIGIDRVPEPACRSTPSELFWIWSAANIGILGVVYGAIIVSFGLSFVQAILAALLGVMSFCLVGYFSF AGKRGRTSTLTLSRAIFGIRGNIAPTLFSWINLMGWEAVNIITGTLTLAALLQACGVPGGHGLTLVCLVLFAGLAIAVSL LGQTAVAAIQRWFTRIFGTMTLIVVGYILFTTPWQAVLAMPSGSWLTAFLPAVSVIAAGTGISWAIAGADYSRYQSAKSK ESHIFAAVTGGAALPLCLLMLAGILLSARLPDLAAAENPIALIGSVLPRWMSIPYLLAATAGIVTIAVLSLYSASLNLLT IGVKIRQIWAVTLDAAIVLGIALYILFVAGDFMGPFVAFLLCCGLFLAAWEAIFLVDYVCLRRHQGYSDSQLFDLHGDNA GVRVGPLLCWLLGALCGLMVTRTGFIDGPLAIGIFADSSLGLFVAFLISLLSYALLINMSKKA
Specific function: Unknown
COG id: COG1457
COG function: function code F; Purine-cytosine permease and related proteins
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purine-cytosine permease family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001248 [H]
Pfam domain/function: PF02133 Transp_cyt_pur [H]
EC number: NA
Molecular weight: Translated: 49051; Mature: 48920
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETNANPAWQVENIGIDRVPEPACRSTPSELFWIWSAANIGILGVVYGAIIVSFGLSFV CCCCCCCCCEEEECCCCCCCCCCHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH QAILAALLGVMSFCLVGYFSFAGKRGRTSTLTLSRAIFGIRGNIAPTLFSWINLMGWEAV HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHH NIITGTLTLAALLQACGVPGGHGLTLVCLVLFAGLAIAVSLLGQTAVAAIQRWFTRIFGT HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MTLIVVGYILFTTPWQAVLAMPSGSWLTAFLPAVSVIAAGTGISWAIAGADYSRYQSAKS HHHHHHHHHHHHCCHHHHEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCC KESHIFAAVTGGAALPLCLLMLAGILLSARLPDLAAAENPIALIGSVLPRWMSIPYLLAA CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHH TAGIVTIAVLSLYSASLNLLTIGVKIRQIWAVTLDAAIVLGIALYILFVAGDFMGPFVAF HHHHHHHHHHHHHHHCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLCCGLFLAAWEAIFLVDYVCLRRHQGYSDSQLFDLHGDNAGVRVGPLLCWLLGALCGLM HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH VTRTGFIDGPLAIGIFADSSLGLFVAFLISLLSYALLINMSKKA HHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SETNANPAWQVENIGIDRVPEPACRSTPSELFWIWSAANIGILGVVYGAIIVSFGLSFV CCCCCCCCEEEECCCCCCCCCCHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH QAILAALLGVMSFCLVGYFSFAGKRGRTSTLTLSRAIFGIRGNIAPTLFSWINLMGWEAV HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHH NIITGTLTLAALLQACGVPGGHGLTLVCLVLFAGLAIAVSLLGQTAVAAIQRWFTRIFGT HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MTLIVVGYILFTTPWQAVLAMPSGSWLTAFLPAVSVIAAGTGISWAIAGADYSRYQSAKS HHHHHHHHHHHHCCHHHHEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCC KESHIFAAVTGGAALPLCLLMLAGILLSARLPDLAAAENPIALIGSVLPRWMSIPYLLAA CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHH TAGIVTIAVLSLYSASLNLLTIGVKIRQIWAVTLDAAIVLGIALYILFVAGDFMGPFVAF HHHHHHHHHHHHHHHCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLCCGLFLAAWEAIFLVDYVCLRRHQGYSDSQLFDLHGDNAGVRVGPLLCWLLGALCGLM HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH VTRTGFIDGPLAIGIFADSSLGLFVAFLISLLSYALLINMSKKA HHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]