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The map label for this gene is dps [H]

Identifier: 238919775

GI number: 238919775

Start: 1812017

End: 1812526

Strand: Reverse

Name: dps [H]

Synonym: NT01EI_1879

Alternate gene names: 238919775

Gene position: 1812526-1812017 (Counterclockwise)

Preceding gene: 238919777

Following gene: 238919773

Centisome position: 47.54

GC content: 57.65

Gene sequence:

>510_bases
ATGAACGTGACCCCGCTGAATACCACCACGCTGGAACCTTCCCTGGTGACCACCCGCAACGATCTGGCCCCAGAGATTAA
GCAACAGACCATCGTTCAACTACAGCCGCTGGTCGCTGAGTTTATCGATCTGGCCCTGCTGACTAAGCAGGCACACTGGA
ACATGAAGGGCAAAAATTTTATCGCTGTACACGAAATGCTGGATGGTTTTCGTACCGCTCTGCTGAACCACCAGGATATC
TTCGCCGAACGTATCGTTCAGCTGGGCGGCATCGCGCTGGGGACTCTGCAAACGACCGCGGCCATCTCATCGCTGGCTCC
CTATCCGTTGAATATTACCCACATCCGTGAACATCTGTCCGCCCTGGCGGATCGCTATGCCGTTGTCGCCAACCATACCC
GGGGGGCGATTGGCGCCACGCAGGACGAGGACAGTGCGGACATGCTGACCGCCGCCTCGCGTGACCTGGACAAGTTTCTG
TGGTTCATCGAGGCCCATCTGGCCGACTAG

Upstream 100 bases:

>100_bases
CTAGCGATCCTCCTGCCCTGCTCCCTATACTGACATAAAAAGTACGTATTATTGCGCTGTCTGACTAAATAAACGACGTA
AATCAATGGGAGAAATAATC

Downstream 100 bases:

>100_bases
CCTCTGACGAGGTGCCATCGATATGAGCCGGTGGCGGATGCCGTCCCGTGTCTTTTTTTGTCCACGCCATCTGCGGCGCA
TTAGAATGGATGCGACTGCG

Product: DNA starvation/stationary phase protection protein Dps

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MNVTPLNTTTLEPSLVTTRNDLAPEIKQQTIVQLQPLVAEFIDLALLTKQAHWNMKGKNFIAVHEMLDGFRTALLNHQDI
FAERIVQLGGIALGTLQTTAAISSLAPYPLNITHIREHLSALADRYAVVANHTRGAIGATQDEDSADMLTAASRDLDKFL
WFIEAHLAD

Sequences:

>Translated_169_residues
MNVTPLNTTTLEPSLVTTRNDLAPEIKQQTIVQLQPLVAEFIDLALLTKQAHWNMKGKNFIAVHEMLDGFRTALLNHQDI
FAERIVQLGGIALGTLQTTAAISSLAPYPLNITHIREHLSALADRYAVVANHTRGAIGATQDEDSADMLTAASRDLDKFL
WFIEAHLAD
>Mature_169_residues
MNVTPLNTTTLEPSLVTTRNDLAPEIKQQTIVQLQPLVAEFIDLALLTKQAHWNMKGKNFIAVHEMLDGFRTALLNHQDI
FAERIVQLGGIALGTLQTTAAISSLAPYPLNITHIREHLSALADRYAVVANHTRGAIGATQDEDSADMLTAASRDLDKFL
WFIEAHLAD

Specific function: During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co- crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering in

COG id: COG0783

COG function: function code P; DNA-binding ferritin-like protein (oxidative damage protectant)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dps family [H]

Homologues:

Organism=Escherichia coli, GI1787032, Length=154, Percent_Identity=61.038961038961, Blast_Score=202, Evalue=1e-53,

Paralogues:

None

Copy number: 6720 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002177
- InterPro:   IPR023188
- InterPro:   IPR023067
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR008331 [H]

Pfam domain/function: PF00210 Ferritin [H]

EC number: NA

Molecular weight: Translated: 18624; Mature: 18624

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS00818 DPS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTPLNTTTLEPSLVTTRNDLAPEIKQQTIVQLQPLVAEFIDLALLTKQAHWNMKGKNF
CCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
IAVHEMLDGFRTALLNHQDIFAERIVQLGGIALGTLQTTAAISSLAPYPLNITHIREHLS
HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ALADRYAVVANHTRGAIGATQDEDSADMLTAASRDLDKFLWFIEAHLAD
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNVTPLNTTTLEPSLVTTRNDLAPEIKQQTIVQLQPLVAEFIDLALLTKQAHWNMKGKNF
CCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
IAVHEMLDGFRTALLNHQDIFAERIVQLGGIALGTLQTTAAISSLAPYPLNITHIREHLS
HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ALADRYAVVANHTRGAIGATQDEDSADMLTAASRDLDKFLWFIEAHLAD
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA