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The map label for this gene is cph2 [H]

Identifier: 238919768

GI number: 238919768

Start: 1803594

End: 1804367

Strand: Direct

Name: cph2 [H]

Synonym: NT01EI_1872

Alternate gene names: 238919768

Gene position: 1803594-1804367 (Clockwise)

Preceding gene: 238919767

Following gene: 238919769

Centisome position: 47.31

GC content: 60.98

Gene sequence:

>774_bases
ATGCAGTATGCGCTCGCTACCGACGAGTTTTATCTGGAGTACCAGCCGCAGTGGAATGTTCATGGGCATATCCAGGGTGC
GGAGCTGTTGATACGCTGGCAGCATCCCCGCTATGGGGTACTGTTGCCCGATCGGTTTATGGACGCCTTGATGAGCTGCC
AACTTGGACCCACGCTATTTGGCTGGTTAGCTGAGCGCGCTCTGCCGCTGCTACAGCGGCTGCGTAATGAGGTCACGCCG
GACTTCACCCTTTCTTTGGCCCTACCGCTGGGCCTCGCCGCCCATAATGCCGTACTGACCCCCTTTACCCAGCCACTGTC
CCAGTATGGTTTGACGCCACCGGTGATCGCATTTATCTGGCAGGGGAGCGACGAACTGCTGTCGGATCCCGCGTGCCTGG
CGGGCATGCACACCCTGCGTGAGCAGGGATATGGGGCCGCGCTGGCGGAGTACGGCGAGGGGTATCGGCAGCTGGCGGCC
CTGAGCCAGCTACCGCTGGATCGGATATATATTCCCCCGGAGGTGATTGGCCTGCTGCCGCATCCGGATGCCATGGTGAT
GGTTCAGCTGATGCTGCGCCTGGCGGATAAAATGGCCATGCGCTGCTGCGCGCAGCGGGTCGACAGCGTACAGCAGTTTG
AGTGCCTGTCGGCAGCGGGATGCTGCGATTTTCAGGGTTCCTATCTTTTCCGTCCCCTGAGCGCACACCAGCTGGCGGTC
GTATGCCACATGTTGAGTGACGCCGACGAAGAGGAGTCATCCTCTGGCGGGTGA

Upstream 100 bases:

>100_bases
AGAATTAGATAGCATAATGAATAGTGAATATTACCATCTCTTAAGTGATGTCAGATCGAGTGCGCCATCTCATAAGCAGG
CGGAGGCGCTGCGGGTCAGA

Downstream 100 bases:

>100_bases
TCCGCTGCGTTATCTCGCGTAATTCCGTTTATCTTACCAGGCATACGACGGTATTTTTGCATTTTCACCGCCTGCGGATT
GTGTCACCCTGTTATAAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MQYALATDEFYLEYQPQWNVHGHIQGAELLIRWQHPRYGVLLPDRFMDALMSCQLGPTLFGWLAERALPLLQRLRNEVTP
DFTLSLALPLGLAAHNAVLTPFTQPLSQYGLTPPVIAFIWQGSDELLSDPACLAGMHTLREQGYGAALAEYGEGYRQLAA
LSQLPLDRIYIPPEVIGLLPHPDAMVMVQLMLRLADKMAMRCCAQRVDSVQQFECLSAAGCCDFQGSYLFRPLSAHQLAV
VCHMLSDADEEESSSGG

Sequences:

>Translated_257_residues
MQYALATDEFYLEYQPQWNVHGHIQGAELLIRWQHPRYGVLLPDRFMDALMSCQLGPTLFGWLAERALPLLQRLRNEVTP
DFTLSLALPLGLAAHNAVLTPFTQPLSQYGLTPPVIAFIWQGSDELLSDPACLAGMHTLREQGYGAALAEYGEGYRQLAA
LSQLPLDRIYIPPEVIGLLPHPDAMVMVQLMLRLADKMAMRCCAQRVDSVQQFECLSAAGCCDFQGSYLFRPLSAHQLAV
VCHMLSDADEEESSSGG
>Mature_257_residues
MQYALATDEFYLEYQPQWNVHGHIQGAELLIRWQHPRYGVLLPDRFMDALMSCQLGPTLFGWLAERALPLLQRLRNEVTP
DFTLSLALPLGLAAHNAVLTPFTQPLSQYGLTPPVIAFIWQGSDELLSDPACLAGMHTLREQGYGAALAEYGEGYRQLAA
LSQLPLDRIYIPPEVIGLLPHPDAMVMVQLMLRLADKMAMRCCAQRVDSVQQFECLSAAGCCDFQGSYLFRPLSAHQLAV
VCHMLSDADEEESSSGG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=238, Percent_Identity=28.1512605042017, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081921, Length=240, Percent_Identity=22.5, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=236, Percent_Identity=21.1864406779661, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=24.4, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 28536; Mature: 28536

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYALATDEFYLEYQPQWNVHGHIQGAELLIRWQHPRYGVLLPDRFMDALMSCQLGPTLF
CCCEEECCCEEEEECCCCCCCEEECCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHH
GWLAERALPLLQRLRNEVTPDFTLSLALPLGLAAHNAVLTPFTQPLSQYGLTPPVIAFIW
HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHEEE
QGSDELLSDPACLAGMHTLREQGYGAALAEYGEGYRQLAALSQLPLDRIYIPPEVIGLLP
CCCHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHCCCC
HPDAMVMVQLMLRLADKMAMRCCAQRVDSVQQFECLSAAGCCDFQGSYLFRPLSAHQLAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHH
VCHMLSDADEEESSSGG
HHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQYALATDEFYLEYQPQWNVHGHIQGAELLIRWQHPRYGVLLPDRFMDALMSCQLGPTLF
CCCEEECCCEEEEECCCCCCCEEECCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCHHHH
GWLAERALPLLQRLRNEVTPDFTLSLALPLGLAAHNAVLTPFTQPLSQYGLTPPVIAFIW
HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHEEE
QGSDELLSDPACLAGMHTLREQGYGAALAEYGEGYRQLAALSQLPLDRIYIPPEVIGLLP
CCCHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHCCCC
HPDAMVMVQLMLRLADKMAMRCCAQRVDSVQQFECLSAAGCCDFQGSYLFRPLSAHQLAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHH
VCHMLSDADEEESSSGG
HHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]