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The map label for this gene is cspC [H]

Identifier: 238919761

GI number: 238919761

Start: 1800843

End: 1801052

Strand: Direct

Name: cspC [H]

Synonym: NT01EI_1865

Alternate gene names: 238919761

Gene position: 1800843-1801052 (Clockwise)

Preceding gene: 238919760

Following gene: 238919762

Centisome position: 47.24

GC content: 52.86

Gene sequence:

>210_bases
ATGAGCAAGAAAAACGGTCAGGTCAAATGGTTTAACGAAAGCAAGGGATTTGGTTTCATCACGCCCGCAGATGGTTCCAA
AGATGTCTTCGTCCATTTTTCTGCCATCCAGAGCGATGGGTTCAAGACCCTGGCAGAAGGTCAGCAGGTCGAGTTCTCTA
TCCAGGACTCCCCGCGTGGCCCGGCCGCCGCTGATGTGATTGCGCTGTAA

Upstream 100 bases:

>100_bases
CGAAGAAATATCTGGACTGATAGTCCCTTTGTCTGGCAGTGACATCGTTAATAGGATCAAGCATGCCTTAGGGCAGTTTT
TCAAAGTGAAGGAAAGCGTA

Downstream 100 bases:

>100_bases
GCAAATCGCGCTATCGCAGTTGACAAAACCCGCCATTGGCGGGTTTTTCTGTTTTTGGCTGCGAAATCAACCGAACGGTA
GCCCTTGTAACGCTGGAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: CSP-C [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKKNGQVKWFNESKGFGFITPADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSIQDSPRGPAAADVIAL

Sequences:

>Translated_69_residues
MSKKNGQVKWFNESKGFGFITPADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSIQDSPRGPAAADVIAL
>Mature_68_residues
SKKNGQVKWFNESKGFGFITPADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSIQDSPRGPAAADVIAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=79.7101449275362, Blast_Score=115, Evalue=7e-28,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=78.2608695652174, Blast_Score=114, Evalue=1e-27,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=70.5882352941177, Blast_Score=103, Evalue=3e-24,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=69.1176470588235, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=68.1818181818182, Blast_Score=97, Evalue=1e-22,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=67.1641791044776, Blast_Score=97, Evalue=2e-22,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=46.969696969697, Blast_Score=77, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=52.4590163934426, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7434; Mature: 7303

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKNGQVKWFNESKGFGFITPADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSIQDSPRG
CCCCCCCEEEEECCCCCEEEECCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCC
PAAADVIAL
CCCEEEEEC
>Mature Secondary Structure 
SKKNGQVKWFNESKGFGFITPADGSKDVFVHFSAIQSDGFKTLAEGQQVEFSIQDSPRG
CCCCCCEEEEECCCCCEEEECCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCC
PAAADVIAL
CCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12384590; 12704152 [H]