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The map label for this gene is nudL [H]

Identifier: 238919755

GI number: 238919755

Start: 1795268

End: 1795840

Strand: Reverse

Name: nudL [H]

Synonym: NT01EI_1859

Alternate gene names: 238919755

Gene position: 1795840-1795268 (Counterclockwise)

Preceding gene: 238919756

Following gene: 238919754

Centisome position: 47.11

GC content: 65.45

Gene sequence:

>573_bases
ATGCGACTGAGCCCAGCGTTGGCCCGCTTTGTAACCGATTTTCAGCTGAATAGCCCGCTGCCGGAGCGCCCGACGCGCCA
CACGCGCCAGGCGGCGGTGCTGATCCCCATCGTCAACCGCCCGCAGCCGACCCTGCTGCTGACCCAACGCGCGGCCGACA
TGCGTAAGCATCCCGGTCAGGTCGCCTTTCCCGGCGGGGCGCGTGATAAACAGGACACCTCTCTATATATCACCGCCCTG
CGTGAAGCGCAGGAGGAGATCGGACTGGATCCCGCCCGGGTCAGGATCCTCGGCCATCTGCCGCCACAGGACAGCAGCAG
TGGCTTCTGCGTTACGCCGGTGGTCGCCATCCTTTCAACGCCGCTGCATCTGTGCCCCAACCATGGCGAAGTCGCACAGA
TCTTTGAGCTGCCCCTGGCGCAAGCGCTGGAACCGGGCCGCTATCACCCGCTGGATGTGACCCGCGCTGGTACGGCGCAC
CGTCTCTACCTGTCCCGCTACCGGGAGTTTCTGATCTGGGGACTGACGGCAGCAATGATCCGCCGCCTGGCCCTGCAGAC
GCGCATGTCCTGA

Upstream 100 bases:

>100_bases
GCGGCATCGTCGCCGACAGCGAGGCAGAGGCCGAATATCAGGAGACGCTGGACAAAGTCAGCCGGATCCTGCCGCTGCTG
GCGGACGGAACACCTCTGCT

Downstream 100 bases:

>100_bases
GCCGAACTCCACTCCCTACCTCAGTTTATCCGGCCAGTGCATCGCCACCGTGCACTTTTGCCAGCCACCCGACCCAAACG
GACGATCTCCAGACTCAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MRLSPALARFVTDFQLNSPLPERPTRHTRQAAVLIPIVNRPQPTLLLTQRAADMRKHPGQVAFPGGARDKQDTSLYITAL
REAQEEIGLDPARVRILGHLPPQDSSSGFCVTPVVAILSTPLHLCPNHGEVAQIFELPLAQALEPGRYHPLDVTRAGTAH
RLYLSRYREFLIWGLTAAMIRRLALQTRMS

Sequences:

>Translated_190_residues
MRLSPALARFVTDFQLNSPLPERPTRHTRQAAVLIPIVNRPQPTLLLTQRAADMRKHPGQVAFPGGARDKQDTSLYITAL
REAQEEIGLDPARVRILGHLPPQDSSSGFCVTPVVAILSTPLHLCPNHGEVAQIFELPLAQALEPGRYHPLDVTRAGTAH
RLYLSRYREFLIWGLTAAMIRRLALQTRMS
>Mature_190_residues
MRLSPALARFVTDFQLNSPLPERPTRHTRQAAVLIPIVNRPQPTLLLTQRAADMRKHPGQVAFPGGARDKQDTSLYITAL
REAQEEIGLDPARVRILGHLPPQDSSSGFCVTPVVAILSTPLHLCPNHGEVAQIFELPLAQALEPGRYHPLDVTRAGTAH
RLYLSRYREFLIWGLTAAMIRRLALQTRMS

Specific function: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives [H]

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI157785656, Length=158, Percent_Identity=35.4430379746835, Blast_Score=87, Evalue=7e-18,
Organism=Escherichia coli, GI1788115, Length=183, Percent_Identity=55.1912568306011, Blast_Score=180, Evalue=5e-47,
Organism=Caenorhabditis elegans, GI17510677, Length=172, Percent_Identity=33.1395348837209, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17536993, Length=169, Percent_Identity=31.3609467455621, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI18859683, Length=164, Percent_Identity=31.0975609756098, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR000059 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: NA

Molecular weight: Translated: 21192; Mature: 21192

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS01293 UPF0035

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSPALARFVTDFQLNSPLPERPTRHTRQAAVLIPIVNRPQPTLLLTQRAADMRKHPGQ
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHCCCC
VAFPGGARDKQDTSLYITALREAQEEIGLDPARVRILGHLPPQDSSSGFCVTPVVAILST
EECCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCEEHHHHHHHHCC
PLHLCPNHGEVAQIFELPLAQALEPGRYHPLDVTRAGTAHRLYLSRYREFLIWGLTAAMI
CHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRLALQTRMS
HHHHHHHCCC
>Mature Secondary Structure
MRLSPALARFVTDFQLNSPLPERPTRHTRQAAVLIPIVNRPQPTLLLTQRAADMRKHPGQ
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHCCCC
VAFPGGARDKQDTSLYITALREAQEEIGLDPARVRILGHLPPQDSSSGFCVTPVVAILST
EECCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCEEHHHHHHHHCC
PLHLCPNHGEVAQIFELPLAQALEPGRYHPLDVTRAGTAHRLYLSRYREFLIWGLTAAMI
CHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RRLALQTRMS
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA