BacMap

Definition	Edwardsiella ictaluri 93-146 chromosome, complete genome.
Accession	NC_012779
Length	3,812,315

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The map label for this gene is yciK [H]

Identifier: 238919607

GI number: 238919607

Start: 1662554

End: 1663318

Strand: Reverse

Name: yciK [H]

Synonym: NT01EI_1706

Alternate gene names: 238919607

Gene position: 1663318-1662554 (Counterclockwise)

Preceding gene: 238919609

Following gene: 238919606

Centisome position: 43.63

GC content: 64.31

Gene sequence:

>765_bases
ATGGTGCAATATCAAGCCTCTGCCGCCCTGTTACAAGGGCGCACTATTCTGGTCACCGGCGCCAGCGCCGGCATTGGCCG
CGAAGCGGCCCTGAGCTACGCCCGTCACGGCGCACGGCTGATTCTGCTGGGTCGAGATGCCGAACGACTGGATACCGTCA
GCCGCCAGATCATTGCCGATGGCGCCCCGTGCCCTCACGTCCTCTGCTGTGACCTGATGACACTGTCACCGTCGCAGAGC
CAGGCGCTGGCGGACGATCTCGCCCGGCGATTCGGTCATCTGGATGGTCTACTCCACTGCGCCGGTCTGCTCGGCAGCAT
CACACCGCTGGCGCAGCAGGCCTATAGCGAGTGGCAGAGCGTGATGCAGGTCAACCTTAACGCCGCATTTCTGTTGACCC
GCGATCTGCTGCCACTGCTGCGACGCGCTGGGCGGGCCTCGATTATCTTTACCAGCTCCAGCGTCGGACGCGCAGGGCGT
GCCGGTTGGGGCGCCTATGCGGTCTCCAAGTTCGCCACCGAAGGAGTGATGCAGGTATGGGCCCAGGAGCTGGCAGGTAG
CACGATACGGGTAAACGCGATTAACCCGGGCGCCACGCGTACCGCGATGCGGGCCAGCGCATTTCCCGGCGAAGATCCGC
AGACGCTGCGCACTCCAGCGCAGATTATGCCGCTGTATCTCTATCTCATGGGAGACGACAGCCTGGGTGAAAATGGGCGC
AGCCTGGATGCCCAGCCGGGGCGGCGCCCCGGGAAAGCAGGTTAA

Upstream 100 bases:

>100_bases
GTGATGCCATTCGCCATATTCCCGTTGACCGGGGCGCAGGCGACGGGCTATAGATCTGCCCTCGGAGAATTTTCCCCTAC
ACGAACGCTTTGGGAGTGTT

Downstream 100 bases:

>100_bases
CCTATCGACATGACGCACGGCGCAAGCGCCGCGCTCTGCAGGAGAACATCATGGATCGGCAACGTCATCAGCAGCGCCAA
CAGCGTCTGAAGGACAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MVQYQASAALLQGRTILVTGASAGIGREAALSYARHGARLILLGRDAERLDTVSRQIIADGAPCPHVLCCDLMTLSPSQS
QALADDLARRFGHLDGLLHCAGLLGSITPLAQQAYSEWQSVMQVNLNAAFLLTRDLLPLLRRAGRASIIFTSSSVGRAGR
AGWGAYAVSKFATEGVMQVWAQELAGSTIRVNAINPGATRTAMRASAFPGEDPQTLRTPAQIMPLYLYLMGDDSLGENGR
SLDAQPGRRPGKAG

Sequences:

>Translated_254_residues
MVQYQASAALLQGRTILVTGASAGIGREAALSYARHGARLILLGRDAERLDTVSRQIIADGAPCPHVLCCDLMTLSPSQS
QALADDLARRFGHLDGLLHCAGLLGSITPLAQQAYSEWQSVMQVNLNAAFLLTRDLLPLLRRAGRASIIFTSSSVGRAGR
AGWGAYAVSKFATEGVMQVWAQELAGSTIRVNAINPGATRTAMRASAFPGEDPQTLRTPAQIMPLYLYLMGDDSLGENGR
SLDAQPGRRPGKAG
>Mature_254_residues
MVQYQASAALLQGRTILVTGASAGIGREAALSYARHGARLILLGRDAERLDTVSRQIIADGAPCPHVLCCDLMTLSPSQS
QALADDLARRFGHLDGLLHCAGLLGSITPLAQQAYSEWQSVMQVNLNAAFLLTRDLLPLLRRAGRASIIFTSSSVGRAGR
AGWGAYAVSKFATEGVMQVWAQELAGSTIRVNAINPGATRTAMRASAFPGEDPQTLRTPAQIMPLYLYLMGDDSLGENGR
SLDAQPGRRPGKAG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=214, Percent_Identity=27.5700934579439, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=27.1794871794872, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4504505, Length=238, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI32455239, Length=204, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI5031765, Length=204, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7657478, Length=215, Percent_Identity=28.8372093023256, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI5031737, Length=206, Percent_Identity=29.6116504854369, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=30.2564102564103, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI32483357, Length=196, Percent_Identity=26.0204081632653, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=26.8774703557312, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI10190704, Length=188, Percent_Identity=25.531914893617, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI38348362, Length=185, Percent_Identity=31.3513513513514, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI38424085, Length=185, Percent_Identity=31.3513513513514, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=58.4, Blast_Score=279, Evalue=1e-76,
Organism=Escherichia coli, GI87082100, Length=225, Percent_Identity=33.7777777777778, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789378, Length=235, Percent_Identity=31.4893617021277, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1787335, Length=193, Percent_Identity=28.4974093264249, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786812, Length=212, Percent_Identity=27.8301886792453, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786701, Length=193, Percent_Identity=32.1243523316062, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788459, Length=190, Percent_Identity=29.4736842105263, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790717, Length=205, Percent_Identity=28.2926829268293, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082160, Length=204, Percent_Identity=25.9803921568627, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787820, Length=211, Percent_Identity=23.696682464455, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789208, Length=201, Percent_Identity=27.363184079602, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787905, Length=211, Percent_Identity=27.9620853080569, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=207, Percent_Identity=30.4347826086957, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=32.48730964467, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=199, Percent_Identity=31.6582914572864, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=201, Percent_Identity=31.8407960199005, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=204, Percent_Identity=30.8823529411765, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=206, Percent_Identity=30.5825242718447, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=30.1020408163265, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=224, Percent_Identity=29.4642857142857, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=31.4720812182741, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=28.740157480315, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=198, Percent_Identity=30.8080808080808, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=248, Percent_Identity=27.0161290322581, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=210, Percent_Identity=30, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=215, Percent_Identity=29.3023255813954, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=224, Percent_Identity=29.0178571428571, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=209, Percent_Identity=31.1004784688995, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=230, Percent_Identity=27.3913043478261, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=198, Percent_Identity=26.7676767676768, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=194, Percent_Identity=26.2886597938144, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=202, Percent_Identity=26.7326732673267, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=205, Percent_Identity=26.8292682926829, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=195, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=24.3523316062176, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32565532, Length=141, Percent_Identity=30.4964539007092, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=225, Percent_Identity=26.2222222222222, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=230, Percent_Identity=28.2608695652174, Blast_Score=89, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6323882, Length=237, Percent_Identity=30.379746835443, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322227, Length=214, Percent_Identity=28.0373831775701, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24644339, Length=205, Percent_Identity=31.219512195122, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI28571526, Length=207, Percent_Identity=33.8164251207729, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI21355319, Length=201, Percent_Identity=29.3532338308458, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=31.4432989690722, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=31.2820512820513, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21358495, Length=203, Percent_Identity=32.0197044334975, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24643142, Length=203, Percent_Identity=34.4827586206897, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI45553409, Length=216, Percent_Identity=27.3148148148148, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24647948, Length=216, Percent_Identity=27.3148148148148, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24647946, Length=216, Percent_Identity=27.3148148148148, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281364892, Length=198, Percent_Identity=29.7979797979798, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357673, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21356301, Length=215, Percent_Identity=25.5813953488372, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26958; Mature: 26958

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQYQASAALLQGRTILVTGASAGIGREAALSYARHGARLILLGRDAERLDTVSRQIIAD
CCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCC
GAPCPHVLCCDLMTLSPSQSQALADDLARRFGHLDGLLHCAGLLGSITPLAQQAYSEWQS
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMQVNLNAAFLLTRDLLPLLRRAGRASIIFTSSSVGRAGRAGWGAYAVSKFATEGVMQVW
HHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AQELAGSTIRVNAINPGATRTAMRASAFPGEDPQTLRTPAQIMPLYLYLMGDDSLGENGR
HHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHCCHHHHHEEEEEEECCCCCCCCCC
SLDAQPGRRPGKAG
CCCCCCCCCCCCCC
>Mature Secondary Structure
MVQYQASAALLQGRTILVTGASAGIGREAALSYARHGARLILLGRDAERLDTVSRQIIAD
CCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCC
GAPCPHVLCCDLMTLSPSQSQALADDLARRFGHLDGLLHCAGLLGSITPLAQQAYSEWQS
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMQVNLNAAFLLTRDLLPLLRRAGRASIIFTSSSVGRAGRAGWGAYAVSKFATEGVMQVW
HHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AQELAGSTIRVNAINPGATRTAMRASAFPGEDPQTLRTPAQIMPLYLYLMGDDSLGENGR
HHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCHHHCCHHHHHEEEEEEECCCCCCCCCC
SLDAQPGRRPGKAG
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]