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The map label for this gene is yciC [C]

Identifier: 238919585

GI number: 238919585

Start: 1644801

End: 1645550

Strand: Reverse

Name: yciC [C]

Synonym: NT01EI_1684

Alternate gene names: 238919585

Gene position: 1645550-1644801 (Counterclockwise)

Preceding gene: 238919587

Following gene: 238919584

Centisome position: 43.16

GC content: 59.6

Gene sequence:

>750_bases
ATGCCCATCACGGCCCGGAGCCTTTACCGTGACAGCGTTAACTTTTTCCGCCACCAGCTGACGCCCATCGTCCTGCTGGC
ACTGCTGACCGCCTTTATCAGCGTGATGCTGAACCAGGCTCTCAGCCCCGGTGCACAGGCGATCAGCCAGCTGAGCAGCG
GTGACAGCATCAGCGCCGCCCGAGGTCTGCAGGAGATGATCCGTCAGATGACACCGGAGCAGCAAATGACGCTGCTGAAA
GTCTCGGCGGCCTCCAGCTTTTCGGTACTGATCGGTAATGTGCTGCTGCTGGGGGGCATGCTGATGCTGATCCCGCAGGC
GTCCAGCGGCATACGCCTCAGCGCGCTGCGCGCCATCGGCCTCTCTGCGCCCATGCTGCCACGTCTGCTGCTGCTGATGC
TGCTGTGTACCCTGATGGTTCAACTGGGTATTACGCTGTTTATCTTGCCGGGGATCATTCTGACCGTCGGTCTGGCCCTA
TCTCCGATGATCATGACCACAGAACACTGTGGCGTAATCGCCACCATTCGCAGCAGCTTTCGGCTCTCCTTCGCCAACGT
ACGGCTCATCAGCCCGGCAATTCTGCTGTGGATGCTGATGAAGCTGGTTCTATTGCTGTTGGTCGATACGCTGGCGGCGC
TGCATCCCAGCCTGGGCATGGTCATCATGGGAACCCTGAGTAACCTGATCTCCGCCGGTCTGATTATCTATCTCTCCCGT
CTGTATATGCTGCTGCGGGCCCCTGCCTGA

Upstream 100 bases:

>100_bases
TGCGGGGTGCCACAGCGACCGCTAACGGGGTACAATCGCCGCAGATCTCTTTTCACCCCGGGCAGCCACTGCCGCCCGCC
GACATGCCAAGGAGCTATGC

Downstream 100 bases:

>100_bases
TCGGTAGACCCCCGCAATCCCGCAGACAGACCGCCGCGCGCCCGATTCACCCGCGTAGGAGACAACCATGCTGAGCCGAC
TCATCATCAAATACAGAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MPITARSLYRDSVNFFRHQLTPIVLLALLTAFISVMLNQALSPGAQAISQLSSGDSISAARGLQEMIRQMTPEQQMTLLK
VSAASSFSVLIGNVLLLGGMLMLIPQASSGIRLSALRAIGLSAPMLPRLLLLMLLCTLMVQLGITLFILPGIILTVGLAL
SPMIMTTEHCGVIATIRSSFRLSFANVRLISPAILLWMLMKLVLLLLVDTLAALHPSLGMVIMGTLSNLISAGLIIYLSR
LYMLLRAPA

Sequences:

>Translated_249_residues
MPITARSLYRDSVNFFRHQLTPIVLLALLTAFISVMLNQALSPGAQAISQLSSGDSISAARGLQEMIRQMTPEQQMTLLK
VSAASSFSVLIGNVLLLGGMLMLIPQASSGIRLSALRAIGLSAPMLPRLLLLMLLCTLMVQLGITLFILPGIILTVGLAL
SPMIMTTEHCGVIATIRSSFRLSFANVRLISPAILLWMLMKLVLLLLVDTLAALHPSLGMVIMGTLSNLISAGLIIYLSR
LYMLLRAPA
>Mature_248_residues
PITARSLYRDSVNFFRHQLTPIVLLALLTAFISVMLNQALSPGAQAISQLSSGDSISAARGLQEMIRQMTPEQQMTLLKV
SAASSFSVLIGNVLLLGGMLMLIPQASSGIRLSALRAIGLSAPMLPRLLLLMLLCTLMVQLGITLFILPGIILTVGLALS
PMIMTTEHCGVIATIRSSFRLSFANVRLISPAILLWMLMKLVLLLLVDTLAALHPSLGMVIMGTLSNLISAGLIIYLSRL
YMLLRAPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0259 family [H]

Homologues:

Organism=Escherichia coli, GI1787508, Length=246, Percent_Identity=52.4390243902439, Blast_Score=243, Evalue=9e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009627 [H]

Pfam domain/function: PF06790 UPF0259 [H]

EC number: NA

Molecular weight: Translated: 26793; Mature: 26662

Theoretical pI: Translated: 11.58; Mature: 11.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPITARSLYRDSVNFFRHQLTPIVLLALLTAFISVMLNQALSPGAQAISQLSSGDSISAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH
RGLQEMIRQMTPEQQMTLLKVSAASSFSVLIGNVLLLGGMLMLIPQASSGIRLSALRAIG
HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
LSAPMLPRLLLLMLLCTLMVQLGITLFILPGIILTVGLALSPMIMTTEHCGVIATIRSSF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RLSFANVRLISPAILLWMLMKLVLLLLVDTLAALHPSLGMVIMGTLSNLISAGLIIYLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LYMLLRAPA
HHHHHHCCC
>Mature Secondary Structure 
PITARSLYRDSVNFFRHQLTPIVLLALLTAFISVMLNQALSPGAQAISQLSSGDSISAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHH
RGLQEMIRQMTPEQQMTLLKVSAASSFSVLIGNVLLLGGMLMLIPQASSGIRLSALRAIG
HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
LSAPMLPRLLLLMLLCTLMVQLGITLFILPGIILTVGLALSPMIMTTEHCGVIATIRSSF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RLSFANVRLISPAILLWMLMKLVLLLLVDTLAALHPSLGMVIMGTLSNLISAGLIIYLSR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LYMLLRAPA
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA