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The map label for this gene is selU [H]

Identifier: 238919553

GI number: 238919553

Start: 1611404

End: 1612525

Strand: Direct

Name: selU [H]

Synonym: NT01EI_1649

Alternate gene names: 238919553

Gene position: 1611404-1612525 (Clockwise)

Preceding gene: 238919552

Following gene: 238919554

Centisome position: 42.27

GC content: 63.01

Gene sequence:

>1122_bases
ATGACAGGCAAGGCTGTAACCCGCCCGGATGGTACGGACTACCTCTCCATTCTGGCCAATGATATTCCGTTAATCGATGT
GCGCGCCCCGGTAGAGTTTCAGACCGGGGCGTTTCCTGGCGCCTGTAACCTGCCGCTGATGCTGGACAGCGAACGCGAGG
CGGTCGGTATCTGTTACAAGCAGCAGGGGCAGGACGCCGCCATCGCGCTGGGTAACCGCCTGGTCCATGGCGAGGTGCGC
GCCGCGCGCATCGCGGCCTGGCGTGAGCAGTGCCAGCGTCACCCCGGGGGCTATCTCTACTGTTTCCGCGGCGGCCTGCG
CTCCCATATCGTACAACAGTGGCTGCGCGAGTCGGGGCTGGACTATCCGCTGATCGAGGGGGGCTATAAGGCGCTGCGCC
ATGCCATCCTGCAGTTTACCGAGCAGGCATCGGTGCTGCCGATGGTGCTGATCGGCGGCAATACCGGCTGTGGCAAAACG
CGGATGCTGCGTGAGCTGCGCGCTGGTATCGATCTGGAGGGCGCCGCCCACCACCGCGGCTCATCTTTTGGGCGTACCGT
GGTTGCACAGGGCACGCAGATCGACTTTGAGAATCAGCTCGGCATCGCCCTGCTGAAGAAGCACTGCGCCGGTATCCGCC
ACTGGATCCTGGAGGATGAGGGGCGGGTGATCGGCTCTAACCATGTTCCGCTGTGCTTCTATAATCAGATGCTGCAGGCG
GCGGTGGCGGTGGTGGATGAGCCCTTTGAGGCCCGTCTGGCCCGGCTGCAGGAGGAGTATATCGACCTGATGCGCGTGGA
GTATGAGCGCGCCTACGGGCGAGAAGCGGGCTGGCAGGCCTATGCGGAGTACCTGCATCACGGGCTGTTTGCCATCCGTC
GCCGACTGGGGCTGGAACGTTACGCTGAGCTGGATGCCCACTTGGTCAGGGCGCTGCAGCAGCAGCAGGCTGGCCGCGGC
AGTGAGGGGCACCTGGCCTGGCTGGTTCCGCTGCTGCATGACTACTATGATCCGATGTACGGCTACCAGTTGGAGAAGAA
GGCAGCGCGGGTTGTTTTTCGCGGTGACTATCGGGCCGTCAGGGAATATCTCCTCTCTCTCAGCCAGACATATGGTGACT
GA

Upstream 100 bases:

>100_bases
CGGCGGTACGCGACGTTGCGCTGCGCCATGGTCTGACGCTGAGTGCCATCGGTGAACTGCACGCGCCGCGTGCGGGTGAA
CCGCTGATCGAGGTTCAGGG

Downstream 100 bases:

>100_bases
TGCGGCTGTTTATTGCGGAAAAGCCCAGCCTGGGGCGGGCTATTGCGGATGTGTTGCCTAAGCCGCACCGGCGTGCGGAC
GGCTATATTCAGTGCGGCGA

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase [H]

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MTGKAVTRPDGTDYLSILANDIPLIDVRAPVEFQTGAFPGACNLPLMLDSEREAVGICYKQQGQDAAIALGNRLVHGEVR
AARIAAWREQCQRHPGGYLYCFRGGLRSHIVQQWLRESGLDYPLIEGGYKALRHAILQFTEQASVLPMVLIGGNTGCGKT
RMLRELRAGIDLEGAAHHRGSSFGRTVVAQGTQIDFENQLGIALLKKHCAGIRHWILEDEGRVIGSNHVPLCFYNQMLQA
AVAVVDEPFEARLARLQEEYIDLMRVEYERAYGREAGWQAYAEYLHHGLFAIRRRLGLERYAELDAHLVRALQQQQAGRG
SEGHLAWLVPLLHDYYDPMYGYQLEKKAARVVFRGDYRAVREYLLSLSQTYGD

Sequences:

>Translated_373_residues
MTGKAVTRPDGTDYLSILANDIPLIDVRAPVEFQTGAFPGACNLPLMLDSEREAVGICYKQQGQDAAIALGNRLVHGEVR
AARIAAWREQCQRHPGGYLYCFRGGLRSHIVQQWLRESGLDYPLIEGGYKALRHAILQFTEQASVLPMVLIGGNTGCGKT
RMLRELRAGIDLEGAAHHRGSSFGRTVVAQGTQIDFENQLGIALLKKHCAGIRHWILEDEGRVIGSNHVPLCFYNQMLQA
AVAVVDEPFEARLARLQEEYIDLMRVEYERAYGREAGWQAYAEYLHHGLFAIRRRLGLERYAELDAHLVRALQQQQAGRG
SEGHLAWLVPLLHDYYDPMYGYQLEKKAARVVFRGDYRAVREYLLSLSQTYGD
>Mature_372_residues
TGKAVTRPDGTDYLSILANDIPLIDVRAPVEFQTGAFPGACNLPLMLDSEREAVGICYKQQGQDAAIALGNRLVHGEVRA
ARIAAWREQCQRHPGGYLYCFRGGLRSHIVQQWLRESGLDYPLIEGGYKALRHAILQFTEQASVLPMVLIGGNTGCGKTR
MLRELRAGIDLEGAAHHRGSSFGRTVVAQGTQIDFENQLGIALLKKHCAGIRHWILEDEGRVIGSNHVPLCFYNQMLQAA
VAVVDEPFEARLARLQEEYIDLMRVEYERAYGREAGWQAYAEYLHHGLFAIRRRLGLERYAELDAHLVRALQQQQAGRGS
EGHLAWLVPLLHDYYDPMYGYQLEKKAARVVFRGDYRAVREYLLSLSQTYGD

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA [H]

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1786712, Length=353, Percent_Identity=58.0736543909348, Blast_Score=415, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR017582 [H]

Pfam domain/function: PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 41983; Mature: 41851

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKAVTRPDGTDYLSILANDIPLIDVRAPVEFQTGAFPGACNLPLMLDSEREAVGICYK
CCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHH
QQGQDAAIALGNRLVHGEVRAARIAAWREQCQRHPGGYLYCFRGGLRSHIVQQWLRESGL
CCCCCHHHHHCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC
DYPLIEGGYKALRHAILQFTEQASVLPMVLIGGNTGCGKTRMLRELRAGIDLEGAAHHRG
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
SSFGRTVVAQGTQIDFENQLGIALLKKHCAGIRHWILEDEGRVIGSNHVPLCFYNQMLQA
CCCCCEEEECCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHH
AVAVVDEPFEARLARLQEEYIDLMRVEYERAYGREAGWQAYAEYLHHGLFAIRRRLGLER
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHH
YAELDAHLVRALQQQQAGRGSEGHLAWLVPLLHDYYDPMYGYQLEKKAARVVFRGDYRAV
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCHHHH
REYLLSLSQTYGD
HHHHHHHHHHCCC
>Mature Secondary Structure 
TGKAVTRPDGTDYLSILANDIPLIDVRAPVEFQTGAFPGACNLPLMLDSEREAVGICYK
CCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHH
QQGQDAAIALGNRLVHGEVRAARIAAWREQCQRHPGGYLYCFRGGLRSHIVQQWLRESGL
CCCCCHHHHHCCEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCC
DYPLIEGGYKALRHAILQFTEQASVLPMVLIGGNTGCGKTRMLRELRAGIDLEGAAHHRG
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCC
SSFGRTVVAQGTQIDFENQLGIALLKKHCAGIRHWILEDEGRVIGSNHVPLCFYNQMLQA
CCCCCEEEECCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHH
AVAVVDEPFEARLARLQEEYIDLMRVEYERAYGREAGWQAYAEYLHHGLFAIRRRLGLER
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHH
YAELDAHLVRALQQQQAGRGSEGHLAWLVPLLHDYYDPMYGYQLEKKAARVVFRGDYRAV
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHEEECCCHHHH
REYLLSLSQTYGD
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA