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The map label for this gene is ycdY [H]

Identifier: 238919482

GI number: 238919482

Start: 1539697

End: 1540281

Strand: Direct

Name: ycdY [H]

Synonym: NT01EI_1578

Alternate gene names: 238919482

Gene position: 1539697-1540281 (Clockwise)

Preceding gene: 238919481

Following gene: 238919485

Centisome position: 40.39

GC content: 64.79

Gene sequence:

>585_bases
ATGAACGATTTTTCCATTGTGTGTCGCCTGCTGGGCTCTCTGTTTGCCCGTCAGCCTCAGGATCCCCTGCTGGATCCGCT
GTTTACCCTGCTACAGAATAATCAGCTGCAGCAGTACTGGCCACTGGAGCAGGATGCCTTGCTGACACGCTTACAGGCGG
GCGCAGGCGATCGCGGCGCGCTGGCGCAGGATTACCTGGGGCTGTTTGCCGCCGAGGGTGCCGTGGCAACTGGGCGCAGC
GCCTATGTGGCGGATGCCGGGGAGCAGCAGGTGCGCGACTTTTTGCTGCAGCGCGGCATGCCGCTGGGGGCCGGAGCAGC
GGACAGCTTTGGCCAGCTGCTGCTGGCGGCCTCTTGGCTGGAGGACCAGGGAGAGCGTGATGAGGTGTTGGCCCAGGCCA
GCCTGTTCGATGTGTATTTGATGCCGTGGGCTGCCCAGTTCCTGGGCAAGGTCGAGGCCCATGCCCGCACGCCGTTTTAC
CGTACGCTGGCGGAGCTGACCCGTGAGGCGCTGCAGGCGCTGCGCGACGATCTGGCAGAGGACGAAGAGGGTACCGCAGG
CGATGAGGAGGAGGGGGTTGCCTGA

Upstream 100 bases:

>100_bases
CTTTTTGCAACGGCGGGGCAGACCGGTGATCCCTGAATTTGCCGATTGGTGATGCGTAGTGATGACAATGTCACTTTTAC
GCTATTGATCAGGAACGGAT

Downstream 100 bases:

>100_bases
CGGGGTAATCGATATCCCCCGCAGTACCGGGGGCAGAGACAAAAAACGGCGCCATATGGCGCCGTTTTACTGCAGGGGAT
GCGCTGCATGACCTGAGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MNDFSIVCRLLGSLFARQPQDPLLDPLFTLLQNNQLQQYWPLEQDALLTRLQAGAGDRGALAQDYLGLFAAEGAVATGRS
AYVADAGEQQVRDFLLQRGMPLGAGAADSFGQLLLAASWLEDQGERDEVLAQASLFDVYLMPWAAQFLGKVEAHARTPFY
RTLAELTREALQALRDDLAEDEEGTAGDEEEGVA

Sequences:

>Translated_194_residues
MNDFSIVCRLLGSLFARQPQDPLLDPLFTLLQNNQLQQYWPLEQDALLTRLQAGAGDRGALAQDYLGLFAAEGAVATGRS
AYVADAGEQQVRDFLLQRGMPLGAGAADSFGQLLLAASWLEDQGERDEVLAQASLFDVYLMPWAAQFLGKVEAHARTPFY
RTLAELTREALQALRDDLAEDEEGTAGDEEEGVA
>Mature_194_residues
MNDFSIVCRLLGSLFARQPQDPLLDPLFTLLQNNQLQQYWPLEQDALLTRLQAGAGDRGALAQDYLGLFAAEGAVATGRS
AYVADAGEQQVRDFLLQRGMPLGAGAADSFGQLLLAASWLEDQGERDEVLAQASLFDVYLMPWAAQFLGKVEAHARTPFY
RTLAELTREALQALRDDLAEDEEGTAGDEEEGVA

Specific function: Unknown

COG id: COG3381

COG function: function code R; Uncharacterized component of anaerobic dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the torD/dmsD family [H]

Homologues:

Organism=Escherichia coli, GI1787272, Length=184, Percent_Identity=58.695652173913, Blast_Score=206, Evalue=9e-55,
Organism=Escherichia coli, GI87081942, Length=189, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020945 [H]

Pfam domain/function: PF02613 Nitrate_red_del [H]

EC number: NA

Molecular weight: Translated: 21192; Mature: 21192

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDFSIVCRLLGSLFARQPQDPLLDPLFTLLQNNQLQQYWPLEQDALLTRLQAGAGDRGA
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCCCH
LAQDYLGLFAAEGAVATGRSAYVADAGEQQVRDFLLQRGMPLGAGAADSFGQLLLAASWL
HHHHHHHHHHHCCCHHCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQGERDEVLAQASLFDVYLMPWAAQFLGKVEAHARTPFYRTLAELTREALQALRDDLAE
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
DEEGTAGDEEEGVA
CCCCCCCCCCCCCC
>Mature Secondary Structure
MNDFSIVCRLLGSLFARQPQDPLLDPLFTLLQNNQLQQYWPLEQDALLTRLQAGAGDRGA
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCCCH
LAQDYLGLFAAEGAVATGRSAYVADAGEQQVRDFLLQRGMPLGAGAADSFGQLLLAASWL
HHHHHHHHHHHCCCHHCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
EDQGERDEVLAQASLFDVYLMPWAAQFLGKVEAHARTPFYRTLAELTREALQALRDDLAE
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
DEEGTAGDEEEGVA
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]