| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919391
Identifier: 238919391
GI number: 238919391
Start: 1460175
End: 1461050
Strand: Reverse
Name: 238919391
Synonym: NT01EI_1485
Alternate gene names: NA
Gene position: 1461050-1460175 (Counterclockwise)
Preceding gene: 238919392
Following gene: 238919389
Centisome position: 38.32
GC content: 50.0
Gene sequence:
>876_bases TTGGGATCGAAGCGTCCGTCCACCGGGGCATTTTACTGGCAGCGTGAGTTTGAGAAACTGGGGCACAAAGTAAAGGTCAT CAGTCCTCAGTATGTAAAACCCTTTGTCCGCGGGCAAAAAAATGATGGTAATGATGCACAGGCCATCGCAGTGGCTCTGA TGCAACCGACAATGCAGTTCGTGCCGCCAAAAAGCCCCGAACAGCAGGATATCCAGGCTTTACACCGGGCAAGGCAGCGT ATTGTCAATCACCGCACTGCTACAGTCTGTCAAATAAGAGGGCTGTTACTTGACCGGGGGATCCCCATTGGCAGTGCTGT CTCCAGAGCTCGCCGGACTATTCCTCTTATCCTTGAAGATGCAGAAAACGGTCTACGTTCCCGTATGCGCAGAACAATTG CCGAGCTCTATGATCTCTTTAACGATCTCGAGCGTCGGATCCATTTTTTTGATAAGGAAATTGAAACAGTATTCAGGCAA TCAGAAGCCTGTCAGCGTATCGCCAGAGTTAAAGGCATTGGCCCTAAAACGGCCACGGCCGTTGTTGCTGCTATTGGCAA AGGAACTGAATTTAAGAATGGCCGCCACTTTGCTGCATGGCTGGGTCTGGTTCCACGCCAGCATTCGAGTGGCGACAGGC AGGTGCTGATGAATATGACGAAAAAAGGCGACAAGCATCTGCGGACTCTTTTTATTCATGGTGCCCGCGCTGTCGTCAGG GTTGCCACGAATAACAATGATGGTCATATGAATCAGTGGGTTAATCAGTTAAAGGAACGGCGCGGATTTAATAAAACGAC CGTGGCGGTCGCTAACAAAAACGCGCGAATAATCTGGTCGATGCTGAGAAATGAGACCGAGTATCAGGTAGTGTGA
Upstream 100 bases:
>100_bases GCTTGCGCTTTGTTGAACGGTTTTGTTAGCGGCTCTTATACGAAACGAACTGGCCGAAAAGAATTGCTCCAGACGCTGGC AAATATTCCTGCATGTCTGA
Downstream 100 bases:
>100_bases AATTAATCCCCTGCCAGAAAAAGTTGCAGCGTACTGAGAAATGGTGACAGGTTACACCTGCACAATCGGAACCTGATTTT TATACTGGCCTCAGAGGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MGSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQR IVNHRTATVCQIRGLLLDRGIPIGSAVSRARRTIPLILEDAENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQ SEACQRIARVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR VATNNNDGHMNQWVNQLKERRGFNKTTVAVANKNARIIWSMLRNETEYQVV
Sequences:
>Translated_291_residues MGSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQR IVNHRTATVCQIRGLLLDRGIPIGSAVSRARRTIPLILEDAENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQ SEACQRIARVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR VATNNNDGHMNQWVNQLKERRGFNKTTVAVANKNARIIWSMLRNETEYQVV >Mature_290_residues GSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQRI VNHRTATVCQIRGLLLDRGIPIGSAVSRARRTIPLILEDAENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQS EACQRIARVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVRV ATNNNDGHMNQWVNQLKERRGFNKTTVAVANKNARIIWSMLRNETEYQVV
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase IS1111A/IS1328/IS1533 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 33127; Mature: 32996
Theoretical pI: Translated: 11.44; Mature: 11.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQF CCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH VPPKSPEQQDIQALHRARQRIVNHRTATVCQIRGLLLDRGIPIGSAVSRARRTIPLILED CCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEHH AENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIGPKTATA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHEECCCEEEE VATNNNDGHMNQWVNQLKERRGFNKTTVAVANKNARIIWSMLRNETEYQVV EEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure GSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQF CCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH VPPKSPEQQDIQALHRARQRIVNHRTATVCQIRGLLLDRGIPIGSAVSRARRTIPLILED CCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEHH AENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIGPKTATA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHEECCCEEEE VATNNNDGHMNQWVNQLKERRGFNKTTVAVANKNARIIWSMLRNETEYQVV EEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1324903; 12704232 [H]