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The map label for this gene is ymbA [H]

Identifier: 238919297

GI number: 238919297

Start: 1376182

End: 1376748

Strand: Direct

Name: ymbA [H]

Synonym: NT01EI_1387

Alternate gene names: 238919297

Gene position: 1376182-1376748 (Clockwise)

Preceding gene: 238919296

Following gene: 238919300

Centisome position: 36.1

GC content: 62.08

Gene sequence:

>567_bases
ATGAAGAGAGGGATGATCCTGTTGGCGGTACTGGCATTGAGCGCCTGTAGCGTGGGCAGTCAGAAGTCTTACTATCAGCT
GCCGACAACGTCGGCGGCGACAACCAGCGTATCCCGGACGGTTTCACAGGGGCACCAGCTGTGGGTGCAGCCGGTGAGTG
TCACCGATCTGCTCGGGGGAATGGGGGTGGTCTATCAGCAGAACGATGTGCAGTTCGTGACGGCCAGCAATAACCTGTGG
GCCAGTCCGCTGGCCCAGCAGCTGACTCAGTCGCTGGTGGCTGGTCTCAGCGCCGGGATGCCGGGGTGGCTGGTCTCAGC
CCAGCCGCTGGAGATGGGACAGGATACCCTGACCGTTAACATCAACGCGTTCTATGGGCGCTATGATGGGAAGGTGGTGG
TGGCCGGAGAGTGGCTGCTGAGCCGCCAGGGGATGCTGACGCAAAAGACATTCCACATCGTGCTCCCGCAGCAGGGGAAT
GGCTATGATGCGCTGGTGCGCACACTGGCGCAGGGATGGCAGCAGGAGATTGCCAGCATGGCCGGCCAGATAGCCCGCGC
CAGCTAA

Upstream 100 bases:

>100_bases
GCGAGCTGCAGCCGGTACTGCGCACCCTGAACCAGAAGAGCAACGCGCTGGTGTTTGAGGCACCGGCGGGTAAAGATCCG
CATCCCAAGGGAGCCAAGCC

Downstream 100 bases:

>100_bases
AATGCGTGACCGCGTATCAGGACGAGCCCTCGCCGACAAAGGCGAGGGCTTTTGTATATTCCTCAGTGAATTACGCTATT
AATTCAGCCTAGAGCAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MKRGMILLAVLALSACSVGSQKSYYQLPTTSAATTSVSRTVSQGHQLWVQPVSVTDLLGGMGVVYQQNDVQFVTASNNLW
ASPLAQQLTQSLVAGLSAGMPGWLVSAQPLEMGQDTLTVNINAFYGRYDGKVVVAGEWLLSRQGMLTQKTFHIVLPQQGN
GYDALVRTLAQGWQQEIASMAGQIARAS

Sequences:

>Translated_188_residues
MKRGMILLAVLALSACSVGSQKSYYQLPTTSAATTSVSRTVSQGHQLWVQPVSVTDLLGGMGVVYQQNDVQFVTASNNLW
ASPLAQQLTQSLVAGLSAGMPGWLVSAQPLEMGQDTLTVNINAFYGRYDGKVVVAGEWLLSRQGMLTQKTFHIVLPQQGN
GYDALVRTLAQGWQQEIASMAGQIARAS
>Mature_188_residues
MKRGMILLAVLALSACSVGSQKSYYQLPTTSAATTSVSRTVSQGHQLWVQPVSVTDLLGGMGVVYQQNDVQFVTASNNLW
ASPLAQQLTQSLVAGLSAGMPGWLVSAQPLEMGQDTLTVNINAFYGRYDGKVVVAGEWLLSRQGMLTQKTFHIVLPQQGN
GYDALVRTLAQGWQQEIASMAGQIARAS

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=188, Percent_Identity=52.1276595744681, Blast_Score=189, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005586 [H]

Pfam domain/function: PF03886 DUF330 [H]

EC number: NA

Molecular weight: Translated: 20147; Mature: 20147

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRGMILLAVLALSACSVGSQKSYYQLPTTSAATTSVSRTVSQGHQLWVQPVSVTDLLGG
CCCCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHCC
MGVVYQQNDVQFVTASNNLWASPLAQQLTQSLVAGLSAGMPGWLVSAQPLEMGQDTLTVN
CCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEE
INAFYGRYDGKVVVAGEWLLSRQGMLTQKTFHIVLPQQGNGYDALVRTLAQGWQQEIASM
EEEEEEECCCEEEEEECHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
AGQIARAS
HHHHHCCC
>Mature Secondary Structure
MKRGMILLAVLALSACSVGSQKSYYQLPTTSAATTSVSRTVSQGHQLWVQPVSVTDLLGG
CCCCHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHCC
MGVVYQQNDVQFVTASNNLWASPLAQQLTQSLVAGLSAGMPGWLVSAQPLEMGQDTLTVN
CCEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEE
INAFYGRYDGKVVVAGEWLLSRQGMLTQKTFHIVLPQQGNGYDALVRTLAQGWQQEIASM
EEEEEEECCCEEEEEECHHHCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
AGQIARAS
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]