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The map label for this gene is dcd

Identifier: 238919215

GI number: 238919215

Start: 1288439

End: 1289020

Strand: Direct

Name: dcd

Synonym: NT01EI_1298

Alternate gene names: 238919215

Gene position: 1288439-1289020 (Clockwise)

Preceding gene: 238919213

Following gene: 238919216

Centisome position: 33.8

GC content: 63.75

Gene sequence:

>582_bases
ATGAGACTGTGTGACCGCGATATAGAGGCATGGCTGGATGACGGCAGGCTGAGTATTACCCCGCGTCCGCCTCAGGAGCG
GATTAGCGGCGCCACCGTGGACGTGCGTCTGGGGAACCGGTTTCGCGTCTTTCAGGGACACACGGCAGCCTATATCGATC
TGAGTGGCCCCAAGCAGGAGGTCGCCGAGGCCCTGGAGCGGGTGATGAGCGATGAGATCCAGCTGGGGGAGGATGAGGCC
TTTTTCCTGCACCCGGGCGAGCTGGCACTGGCCGTCACCTATGAATCCGTCACGCTGCCGGACGATCTGGTCGGCTGGCT
GGACGGGCGCTCCTCGCTGGCGCGCCTGGGGCTGATGGTCCACGTCACGGCCCATCGCATCGATCCCGGCTGGCAGGGCT
GCATCGTGCTGGAGTTTTTTAACTCCGGTAAGCTGCCGTTGGCGCTGCGCCCGGGGATGTTGATTGGCGCCCTGAGCTTT
GAACCGCTTTCCGCCCCGGCGGCGCGTCCCTATAATCGCCGGGAGGATGCCAAGTACAAAGGGCAACAGGGCGCGGTAGC
CAGCCGAATCGATAAAGACTGA

Upstream 100 bases:

>100_bases
GGGGCAATGTCTCTGAATCATTTCGGAAAAAGGGGGTGATCGGGTAAGATATTCTCATCTGCAGCCGTGCTGCGTGGCGA
TGAGACGGAGATGAACTATC

Downstream 100 bases:

>100_bases
TCCCATGATCGTAACGGACGACCAAGACTGAGGATGGCATGAGACGACTTCTCACCACATTAATGATCCTGCTGGTGGTG
GTGGCGGCAGGCATCAGTGC

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRLCDRDIEAWLDDGRLSITPRPPQERISGATVDVRLGNRFRVFQGHTAAYIDLSGPKQEVAEALERVMSDEIQLGEDEA
FFLHPGELALAVTYESVTLPDDLVGWLDGRSSLARLGLMVHVTAHRIDPGWQGCIVLEFFNSGKLPLALRPGMLIGALSF
EPLSAPAARPYNRREDAKYKGQQGAVASRIDKD

Sequences:

>Translated_193_residues
MRLCDRDIEAWLDDGRLSITPRPPQERISGATVDVRLGNRFRVFQGHTAAYIDLSGPKQEVAEALERVMSDEIQLGEDEA
FFLHPGELALAVTYESVTLPDDLVGWLDGRSSLARLGLMVHVTAHRIDPGWQGCIVLEFFNSGKLPLALRPGMLIGALSF
EPLSAPAARPYNRREDAKYKGQQGAVASRIDKD
>Mature_193_residues
MRLCDRDIEAWLDDGRLSITPRPPQERISGATVDVRLGNRFRVFQGHTAAYIDLSGPKQEVAEALERVMSDEIQLGEDEA
FFLHPGELALAVTYESVTLPDDLVGWLDGRSSLARLGLMVHVTAHRIDPGWQGCIVLEFFNSGKLPLALRPGMLIGALSF
EPLSAPAARPYNRREDAKYKGQQGAVASRIDKD

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family

Homologues:

Organism=Escherichia coli, GI1788379, Length=193, Percent_Identity=87.5647668393782, Blast_Score=348, Evalue=1e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCD_EDWI9 (C5BCP0)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002932730.1
- GeneID:   7960628
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_1298
- OMA:   FSGHVTL
- ProtClustDB:   PRK00416
- HAMAP:   MF_00146
- InterPro:   IPR011962
- InterPro:   IPR008180
- TIGRFAMs:   TIGR02274

Pfam domain/function: PF00692 dUTPase

EC number: =3.5.4.13

Molecular weight: Translated: 21341; Mature: 21341

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLCDRDIEAWLDDGRLSITPRPPQERISGATVDVRLGNRFRVFQGHTAAYIDLSGPKQE
CCCCHHHHHHHHCCCEEEECCCCHHHHHCCCEEEEEECCEEEEEECCEEEEEECCCCHHH
VAEALERVMSDEIQLGEDEAFFLHPGELALAVTYESVTLPDDLVGWLDGRSSLARLGLMV
HHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCEECCHHHHHHHCCHHHHHHHCEEE
HVTAHRIDPGWQGCIVLEFFNSGKLPLALRPGMLIGALSFEPLSAPAARPYNRREDAKYK
EEEEEECCCCCCEEEEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
GQQGAVASRIDKD
CCCCCHHHHCCCC
>Mature Secondary Structure
MRLCDRDIEAWLDDGRLSITPRPPQERISGATVDVRLGNRFRVFQGHTAAYIDLSGPKQE
CCCCHHHHHHHHCCCEEEECCCCHHHHHCCCEEEEEECCEEEEEECCEEEEEECCCCHHH
VAEALERVMSDEIQLGEDEAFFLHPGELALAVTYESVTLPDDLVGWLDGRSSLARLGLMV
HHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEECCEECCHHHHHHHCCHHHHHHHCEEE
HVTAHRIDPGWQGCIVLEFFNSGKLPLALRPGMLIGALSFEPLSAPAARPYNRREDAKYK
EEEEEECCCCCCEEEEEEEECCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
GQQGAVASRIDKD
CCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA