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The map label for this gene is yhcZ [H]

Identifier: 238917970

GI number: 238917970

Start: 2133442

End: 2134086

Strand: Reverse

Name: yhcZ [H]

Synonym: EUBELI_02060

Alternate gene names: 238917970

Gene position: 2134086-2133442 (Counterclockwise)

Preceding gene: 238917971

Following gene: 238917969

Centisome position: 99.53

GC content: 29.77

Gene sequence:

>645_bases
ATGGCAATTAATGTTTTACTGGCCGATGACCATAAGATGGTCAGAGAAGGATTAAAACAATTATTGGAAATAGATTCTGA
GATTAAGGTTGTTGGCGAGGCAGGAGATGGTTATGAGTGTCTTAATATTACTAACAAGACGAAACCTAATATTGTTTTAC
TTGATTTGAATATGCCTAATCTTGATGGACTTCAGGTTCTTAGTATAATGAAACAACAAAAAATGTTATGTAAAATTATA
GTGTTGACAATACATAATGAAATTGAATATTTAATAAAAGCAATCGATATCGGTTGTGATGGATATATCCTAAAGGACTC
TAATTTTGATACATTAAAGAAAGCTATATTTTCTGTTTATGCTGGAGAAACATATATTGAACCCAGTCTTATGCCACTTC
TTAATGCTAGTCTTGCAGAGAGAGATGTATTAAAGGATAAAGTATCAGAGCTAACAAGAAGAGAACTGGAGGTTTTAAAA
ATGATTGCATCTGGAGCATTTAATAAAGAAATTGCATCAACACTTAACATAAGTGAAAGAACAGTAAAAAATCATGTTTC
AAATATTTTCAAAAAAATTGGAGTATCTGATAGAACGCAAGCTGCAGTATTTGCAATTAAAAATAATATAATAAGTATAA
AATAA

Upstream 100 bases:

>100_bases
AAAGAAAGAGTTTCATTGTTAAAAGGAACAATACAATATTCTAATAATAATGGCTCACAGTTTTTAATTAATATTCCAGT
GTGGTGAGGAGGACTTAACA

Downstream 100 bases:

>100_bases
ATGAATTATTAAGAGTATAAATTGATGAGTTTATACTCTTTTTTATTTTAAATCGTATCTATAATGTTTCACATGAAACA
TTAAAAAAATTCAAATTTTT

Product: two-component system NarL family response regulator DegU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MAINVLLADDHKMVREGLKQLLEIDSEIKVVGEAGDGYECLNITNKTKPNIVLLDLNMPNLDGLQVLSIMKQQKMLCKII
VLTIHNEIEYLIKAIDIGCDGYILKDSNFDTLKKAIFSVYAGETYIEPSLMPLLNASLAERDVLKDKVSELTRRELEVLK
MIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQAAVFAIKNNIISIK

Sequences:

>Translated_214_residues
MAINVLLADDHKMVREGLKQLLEIDSEIKVVGEAGDGYECLNITNKTKPNIVLLDLNMPNLDGLQVLSIMKQQKMLCKII
VLTIHNEIEYLIKAIDIGCDGYILKDSNFDTLKKAIFSVYAGETYIEPSLMPLLNASLAERDVLKDKVSELTRRELEVLK
MIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQAAVFAIKNNIISIK
>Mature_213_residues
AINVLLADDHKMVREGLKQLLEIDSEIKVVGEAGDGYECLNITNKTKPNIVLLDLNMPNLDGLQVLSIMKQQKMLCKIIV
LTIHNEIEYLIKAIDIGCDGYILKDSNFDTLKKAIFSVYAGETYIEPSLMPLLNASLAERDVLKDKVSELTRRELEVLKM
IASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQAAVFAIKNNIISIK

Specific function: Member of the two-component regulatory system yhcY/yhcZ [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=209, Percent_Identity=38.2775119617225, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1787473, Length=209, Percent_Identity=40.1913875598086, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1788222, Length=208, Percent_Identity=32.6923076923077, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1790102, Length=200, Percent_Identity=31.5, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786747, Length=193, Percent_Identity=27.979274611399, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788712, Length=208, Percent_Identity=25.4807692307692, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788546, Length=198, Percent_Identity=31.3131313131313, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI87082052, Length=130, Percent_Identity=30, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787277, Length=90, Percent_Identity=42.2222222222222, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23877; Mature: 23746

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINVLLADDHKMVREGLKQLLEIDSEIKVVGEAGDGYECLNITNKTKPNIVLLDLNMPN
CEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCC
LDGLQVLSIMKQQKMLCKIIVLTIHNEIEYLIKAIDIGCDGYILKDSNFDTLKKAIFSVY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
AGETYIEPSLMPLLNASLAERDVLKDKVSELTRRELEVLKMIASGAFNKEIASTLNISER
CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHH
TVKNHVSNIFKKIGVSDRTQAAVFAIKNNIISIK
HHHHHHHHHHHHCCCCCCHHHHHEEEECCEEECC
>Mature Secondary Structure 
AINVLLADDHKMVREGLKQLLEIDSEIKVVGEAGDGYECLNITNKTKPNIVLLDLNMPN
EEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCC
LDGLQVLSIMKQQKMLCKIIVLTIHNEIEYLIKAIDIGCDGYILKDSNFDTLKKAIFSVY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHH
AGETYIEPSLMPLLNASLAERDVLKDKVSELTRRELEVLKMIASGAFNKEIASTLNISER
CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHH
TVKNHVSNIFKKIGVSDRTQAAVFAIKNNIISIK
HHHHHHHHHHHHCCCCCCHHHHHEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]