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The map label for this gene is rpoE [C]

Identifier: 238917917

GI number: 238917917

Start: 2068828

End: 2069400

Strand: Reverse

Name: rpoE [C]

Synonym: EUBELI_02004

Alternate gene names: 238917917

Gene position: 2069400-2068828 (Counterclockwise)

Preceding gene: 238917918

Following gene: 238917916

Centisome position: 96.51

GC content: 38.92

Gene sequence:

>573_bases
ATGGGTTTGCTGTCTAAAGGTCAGGATGTCGAACTGATAAAAAGAATCCTTGATAATAATGACAGAAAAGCGGCAGATGA
ACTTGTAAGCCGTTATTACAAATGTGTATATAAGCACATTTATATTAAGGTTAAAGATGAAGAGACGGGGATGGATATCA
CGCAGGAAACATTTATTGCGGCATTAAGAGGGTTGGGGTCCTTTAATGATGCAAAAGCTTCATTTAAGACATGGCTTACA
AGAATTGCTGACAACAAGGTCACAGATTATTTCAGGAGCAGGCAGTATCATGAGAGTATTGTTACCCAGATTATGGATGA
TACTTTACCAGAAACAGCAGATGAAAGAGCAGGTACGGAGACGAGTGTGCTTGATAAGCTTTCATATGAAGAGATGGAAA
AAATGTATGGTCATCATAAGAATTGTGAATGGGAGACATTCAGACTGAAAGTGTACGAGGGATATACTTTTGGGGAAATC
AGTGCCAGTCAGGGGGTTGAACTTAGTACGGTAAAGAGCAGATATTATTCAATGCTTAAACGAGTCAGAAAGGAGTGGGA
TTATCTTGAGTAA

Upstream 100 bases:

>100_bases
AATTTTTTAAACCTTTTTAAAAGTTGTTCCGTATATATCAATGAAAGAACAAAAGATAATTGTTTTTAGTCTGTAATACA
TAGTAACCGGGGGTGAGTAG

Downstream 100 bases:

>100_bases
AGTAAAATATCCAGATAGGGAAAAGATTAGAAACCAGATAGACATTATTTTGGATAAGTCAGATTTGTTTAATGATTCAC
AGGATAAGACTATACATACA

Product: ECF subfamily RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-E Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; ECF Sigma Factor; RNA Polymerase Sigma Subunit Ecf Family; RNA Polymerase Sigma Factor RpoE; RNA Polymerase Sigma Factor; ECF Subfamily Factor; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MGLLSKGQDVELIKRILDNNDRKAADELVSRYYKCVYKHIYIKVKDEETGMDITQETFIAALRGLGSFNDAKASFKTWLT
RIADNKVTDYFRSRQYHESIVTQIMDDTLPETADERAGTETSVLDKLSYEEMEKMYGHHKNCEWETFRLKVYEGYTFGEI
SASQGVELSTVKSRYYSMLKRVRKEWDYLE

Sequences:

>Translated_190_residues
MGLLSKGQDVELIKRILDNNDRKAADELVSRYYKCVYKHIYIKVKDEETGMDITQETFIAALRGLGSFNDAKASFKTWLT
RIADNKVTDYFRSRQYHESIVTQIMDDTLPETADERAGTETSVLDKLSYEEMEKMYGHHKNCEWETFRLKVYEGYTFGEI
SASQGVELSTVKSRYYSMLKRVRKEWDYLE
>Mature_189_residues
GLLSKGQDVELIKRILDNNDRKAADELVSRYYKCVYKHIYIKVKDEETGMDITQETFIAALRGLGSFNDAKASFKTWLTR
IADNKVTDYFRSRQYHESIVTQIMDDTLPETADERAGTETSVLDKLSYEEMEKMYGHHKNCEWETFRLKVYEGYTFGEIS
ASQGVELSTVKSRYYSMLKRVRKEWDYLE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22297; Mature: 22166

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLSKGQDVELIKRILDNNDRKAADELVSRYYKCVYKHIYIKVKDEETGMDITQETFIA
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHH
ALRGLGSFNDAKASFKTWLTRIADNKVTDYFRSRQYHESIVTQIMDDTLPETADERAGTE
HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCH
TSVLDKLSYEEMEKMYGHHKNCEWETFRLKVYEGYTFGEISASQGVELSTVKSRYYSMLK
HHHHHHHCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
RVRKEWDYLE
HHHHHCCCCC
>Mature Secondary Structure 
GLLSKGQDVELIKRILDNNDRKAADELVSRYYKCVYKHIYIKVKDEETGMDITQETFIA
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHH
ALRGLGSFNDAKASFKTWLTRIADNKVTDYFRSRQYHESIVTQIMDDTLPETADERAGTE
HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCH
TSVLDKLSYEEMEKMYGHHKNCEWETFRLKVYEGYTFGEISASQGVELSTVKSRYYSMLK
HHHHHHHCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
RVRKEWDYLE
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA