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The map label for this gene is atpD [H]

Identifier: 238917847

GI number: 238917847

Start: 1998799

End: 2000226

Strand: Reverse

Name: atpD [H]

Synonym: EUBELI_01928

Alternate gene names: 238917847

Gene position: 2000226-1998799 (Counterclockwise)

Preceding gene: 238917848

Following gene: 238917846

Centisome position: 93.29

GC content: 41.95

Gene sequence:

>1428_bases
ATGCTATCAATTAATAAAACAATGGAGGGAATAATGGCAGAGAATAATATTGGTAAGATTACTCAGGTTATCGGTGCTGT
AATCGATATTAAGTTTACAGACGGTAATCTGCCAGAAATCAATTCGGCCATCAATATTAAGACTAATGACGGCGGTAAGC
TTGTTGTAGAGGTTGCCCAGCATCTTGGTGATGATGTAGTAAGATGTATAGCCATGGGTCCTACAGATGGTCTTGTCAGA
GGTATGGAAGCAGAGGCAACAGGAGCCCCAATTTCTGTACCAGTAGGTGAACAGACTTTAGGAAGAATGTTCAATGTATT
AGGTGAGCCAATAGATAATAAGCCAGCTCCAGAAGTACAGGAGCATATGCCTATTCACAGAAAGGCACCTGCATTTGCAG
AGCAGGCAACTAATACAGAGATTCTTGAGACTGGTATCAAGGTTGTAGATTTACTTTGTCCTTACCAGAAGGGTGGTAAG
ATAGGACTTTTCGGAGGTGCCGGAGTAGGTAAGACAGTACTTATTCAGGAACTTATCAGAAATATTGCAACTGAGCATGG
TGGATATTCAGTATTTACTGGTGTTGGAGAAAGAACAAGAGAGGGTAACGACCTTTATCATGAGATGATGGAATCAGGCG
TTATCGAGAAAACTACCATGGTGTTCGGACAGATGAACGAACCACCTGGAGCAAGAATGAGAGTTGGTCTTGCAGGACTT
ACAATGGCTGAGTACTTCAGAGATAAGGGTGGAAAGGATGTACTTCTTTTCATTGATAATATCTACAGATTTACCCAGGC
TGGTTCAGAGGTTTCAGCACTTCTTGGACGTATGCCTTCAGCCGTTGGTTATCAGCCAACATTACAGACAGAGATGGGTG
CTCTTCAGGAGAGAATCACATCTACTAAGAACGGATCTATTACATCTGTTCAGGCTGTATATGTACCAGCCGATGACCTT
ACTGACCCGGCTCCGGCTACAACATTTGCACATCTGGATGCTACTACAGTTCTTTCAAGATCAATCGTTGAGCTTGGTAT
CTATCCAGCCGTTGACCCGTTAGAGTCTACATCAAGAATTCTTGATCCAAGAATTGTTGGTGAGGAGCATTACAAGGTTG
CAAGATCAGTTCAGGAAATCTTACAGAAATACAAAGAATTACAGGATATCATCGCTATCCTTGGTATGGACGAGCTTTCA
GAGGATGATAAGCTTGTTGTTTCAAGAGCAAGAAAGGTTCAGAGATTCTTATCACAGCCATTCTTCGTTGCAGGACAGTT
TACTGGTCTTGAAGGAAGATATGTTCCTGTAAGTGAGACTATTCAGGGCTTCAAGGAAATTATCGAAGGAAAGTATGATG
ACATTCCAGAGAGTTACTTCCTTAACTGTGGTGGAATTGATGATGTTTTAGCTAAGGTAGAGAAGTAG

Upstream 100 bases:

>100_bases
AGCAATGCAGAGGATATGATATCAGATCTGTCGCTTAAGTTTAACAGAGCGCGTCAGGCTTCAATTACACAGGAACTTAC
AGAGATTATAGCAGGAGCGA

Downstream 100 bases:

>100_bases
AAAAGAGGTTGTAATGGCAGATTTACAGACAATAAAGCTTCTGGTTAATACGCCGGACAGAGTTTTCTACCATGATGACG
CTACATTTGTTGAACTTTCT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MLSINKTMEGIMAENNIGKITQVIGAVIDIKFTDGNLPEINSAINIKTNDGGKLVVEVAQHLGDDVVRCIAMGPTDGLVR
GMEAEATGAPISVPVGEQTLGRMFNVLGEPIDNKPAPEVQEHMPIHRKAPAFAEQATNTEILETGIKVVDLLCPYQKGGK
IGLFGGAGVGKTVLIQELIRNIATEHGGYSVFTGVGERTREGNDLYHEMMESGVIEKTTMVFGQMNEPPGARMRVGLAGL
TMAEYFRDKGGKDVLLFIDNIYRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQAVYVPADDL
TDPAPATTFAHLDATTVLSRSIVELGIYPAVDPLESTSRILDPRIVGEEHYKVARSVQEILQKYKELQDIIAILGMDELS
EDDKLVVSRARKVQRFLSQPFFVAGQFTGLEGRYVPVSETIQGFKEIIEGKYDDIPESYFLNCGGIDDVLAKVEK

Sequences:

>Translated_475_residues
MLSINKTMEGIMAENNIGKITQVIGAVIDIKFTDGNLPEINSAINIKTNDGGKLVVEVAQHLGDDVVRCIAMGPTDGLVR
GMEAEATGAPISVPVGEQTLGRMFNVLGEPIDNKPAPEVQEHMPIHRKAPAFAEQATNTEILETGIKVVDLLCPYQKGGK
IGLFGGAGVGKTVLIQELIRNIATEHGGYSVFTGVGERTREGNDLYHEMMESGVIEKTTMVFGQMNEPPGARMRVGLAGL
TMAEYFRDKGGKDVLLFIDNIYRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQAVYVPADDL
TDPAPATTFAHLDATTVLSRSIVELGIYPAVDPLESTSRILDPRIVGEEHYKVARSVQEILQKYKELQDIIAILGMDELS
EDDKLVVSRARKVQRFLSQPFFVAGQFTGLEGRYVPVSETIQGFKEIIEGKYDDIPESYFLNCGGIDDVLAKVEK
>Mature_475_residues
MLSINKTMEGIMAENNIGKITQVIGAVIDIKFTDGNLPEINSAINIKTNDGGKLVVEVAQHLGDDVVRCIAMGPTDGLVR
GMEAEATGAPISVPVGEQTLGRMFNVLGEPIDNKPAPEVQEHMPIHRKAPAFAEQATNTEILETGIKVVDLLCPYQKGGK
IGLFGGAGVGKTVLIQELIRNIATEHGGYSVFTGVGERTREGNDLYHEMMESGVIEKTTMVFGQMNEPPGARMRVGLAGL
TMAEYFRDKGGKDVLLFIDNIYRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERITSTKNGSITSVQAVYVPADDL
TDPAPATTFAHLDATTVLSRSIVELGIYPAVDPLESTSRILDPRIVGEEHYKVARSVQEILQKYKELQDIIAILGMDELS
EDDKLVVSRARKVQRFLSQPFFVAGQFTGLEGRYVPVSETIQGFKEIIEGKYDDIPESYFLNCGGIDDVLAKVEK

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=464, Percent_Identity=69.1810344827586, Blast_Score=647, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=406, Percent_Identity=24.6305418719212, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI19913424, Length=349, Percent_Identity=26.3610315186246, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI19913426, Length=358, Percent_Identity=24.0223463687151, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI50345984, Length=415, Percent_Identity=24.8192771084337, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI4757810, Length=415, Percent_Identity=24.8192771084337, Blast_Score=99, Evalue=7e-21,
Organism=Escherichia coli, GI1790170, Length=458, Percent_Identity=67.2489082969432, Blast_Score=630, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=318, Percent_Identity=30.5031446540881, Blast_Score=138, Evalue=8e-34,
Organism=Escherichia coli, GI1790172, Length=391, Percent_Identity=26.5984654731458, Blast_Score=123, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI25144756, Length=469, Percent_Identity=68.0170575692964, Blast_Score=641, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570191, Length=407, Percent_Identity=24.8157248157248, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17565854, Length=354, Percent_Identity=27.683615819209, Blast_Score=125, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17510931, Length=399, Percent_Identity=24.0601503759398, Blast_Score=121, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI71988080, Length=391, Percent_Identity=25.0639386189258, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=391, Percent_Identity=25.0639386189258, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=343, Percent_Identity=24.198250728863, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=70.7423580786026, Blast_Score=650, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=406, Percent_Identity=26.1083743842365, Blast_Score=134, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6319370, Length=365, Percent_Identity=26.027397260274, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6320016, Length=231, Percent_Identity=27.7056277056277, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=68.1034482758621, Blast_Score=634, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=461, Percent_Identity=66.5943600867679, Blast_Score=607, Evalue=1e-174,
Organism=Drosophila melanogaster, GI281361666, Length=402, Percent_Identity=24.6268656716418, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24646341, Length=402, Percent_Identity=24.6268656716418, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI17136796, Length=402, Percent_Identity=24.6268656716418, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI20129479, Length=348, Percent_Identity=26.7241379310345, Blast_Score=121, Evalue=9e-28,
Organism=Drosophila melanogaster, GI24583988, Length=360, Percent_Identity=26.1111111111111, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24583986, Length=360, Percent_Identity=26.1111111111111, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24583984, Length=360, Percent_Identity=26.1111111111111, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24583992, Length=353, Percent_Identity=26.628895184136, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24658560, Length=392, Percent_Identity=25.765306122449, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=55.4347826086957, Blast_Score=96, Evalue=5e-20,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51596; Mature: 51596

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSINKTMEGIMAENNIGKITQVIGAVIDIKFTDGNLPEINSAINIKTNDGGKLVVEVAQ
CCCCHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHH
HLGDDVVRCIAMGPTDGLVRGMEAEATGAPISVPVGEQTLGRMFNVLGEPIDNKPAPEVQ
HHCHHHHHHHHCCCCHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCHH
EHMPIHRKAPAFAEQATNTEILETGIKVVDLLCPYQKGGKIGLFGGAGVGKTVLIQELIR
HCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH
NIATEHGGYSVFTGVGERTREGNDLYHEMMESGVIEKTTMVFGQMNEPPGARMRVGLAGL
HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEHHHH
TMAEYFRDKGGKDVLLFIDNIYRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERIT
HHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
STKNGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIVELGIYPAVDPLESTSRI
CCCCCCEEEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LDPRIVGEEHYKVARSVQEILQKYKELQDIIAILGMDELSEDDKLVVSRARKVQRFLSQP
CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCC
FFVAGQFTGLEGRYVPVSETIQGFKEIIEGKYDDIPESYFLNCGGIDDVLAKVEK
CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHEEECCCHHHHHHHHCC
>Mature Secondary Structure
MLSINKTMEGIMAENNIGKITQVIGAVIDIKFTDGNLPEINSAINIKTNDGGKLVVEVAQ
CCCCHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHH
HLGDDVVRCIAMGPTDGLVRGMEAEATGAPISVPVGEQTLGRMFNVLGEPIDNKPAPEVQ
HHCHHHHHHHHCCCCHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCCCCCCHH
EHMPIHRKAPAFAEQATNTEILETGIKVVDLLCPYQKGGKIGLFGGAGVGKTVLIQELIR
HCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHH
NIATEHGGYSVFTGVGERTREGNDLYHEMMESGVIEKTTMVFGQMNEPPGARMRVGLAGL
HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEHHHH
TMAEYFRDKGGKDVLLFIDNIYRFTQAGSEVSALLGRMPSAVGYQPTLQTEMGALQERIT
HHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
STKNGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIVELGIYPAVDPLESTSRI
CCCCCCEEEEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LDPRIVGEEHYKVARSVQEILQKYKELQDIIAILGMDELSEDDKLVVSRARKVQRFLSQP
CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCC
FFVAGQFTGLEGRYVPVSETIQGFKEIIEGKYDDIPESYFLNCGGIDDVLAKVEK
CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA