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The map label for this gene is spoVT [H]

Identifier: 238917795

GI number: 238917795

Start: 1937968

End: 1938510

Strand: Reverse

Name: spoVT [H]

Synonym: EUBELI_01876

Alternate gene names: 238917795

Gene position: 1938510-1937968 (Counterclockwise)

Preceding gene: 238917796

Following gene: 238917794

Centisome position: 90.41

GC content: 40.33

Gene sequence:

>543_bases
ATGAAAGCCACAGGAATTGTAAGAAGGATAGATGATTTAGGCAGAATTGTCATTCCAAAGGAGATAAGAAGGACACTTCA
TATAAGGGAAACTGACCCGATGGAGATATTTACGGATGCTGAGGGGCAGATTATTCTGAAAAAATATTCACCGATAGGAG
ATATTAGCACATTTGCAGGAAAATATGCAGAATCACTGTCGGATGCGACCGGAATGACAGTATGTATAACTGACAGGGAA
CAGGTTATTGCTGCATCAGGTGACGATAAGAAGAATCTGATGAATAAGCCTGTCACAAAGGAGCTTAATCAGGCAATGGA
GGGAAGATGTACCATTGCTGCAGGTGAAGGAGAGGATGGATTTGTGAAAGTCACTGATGAGGCGCAGTTTAAGCAGGAAA
TTATGTATCCGATAATATGTCAGGGAGATGTTTTAGGTACTGTGCTTATGATGTCTATTGACATGAAGCCAAAGTTTACA
GATAATGAAAAGAAAATGGTAAAGACGGCAGCTAACTTTTTAGGAAAGCATATGGAGTCGTAG

Upstream 100 bases:

>100_bases
AAAATTATTACATGAGATGCATAATTCTTCCTGTTTTCCACATACTACCCATACATTATAAATTATGGAAAGTATGTAAG
AATCGGGAGGAATTATTAAT

Downstream 100 bases:

>100_bases
AAAGAGAAGATTAAGGAGAAGAACATGAGATTAGATAAATATTTAAAAGTATCAAGACTTATAAAGAGAAGGACTGTTGC
CAACGATGCATGTGATGCAG

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKATGIVRRIDDLGRIVIPKEIRRTLHIRETDPMEIFTDAEGQIILKKYSPIGDISTFAGKYAESLSDATGMTVCITDRE
QVIAASGDDKKNLMNKPVTKELNQAMEGRCTIAAGEGEDGFVKVTDEAQFKQEIMYPIICQGDVLGTVLMMSIDMKPKFT
DNEKKMVKTAANFLGKHMES

Sequences:

>Translated_180_residues
MKATGIVRRIDDLGRIVIPKEIRRTLHIRETDPMEIFTDAEGQIILKKYSPIGDISTFAGKYAESLSDATGMTVCITDRE
QVIAASGDDKKNLMNKPVTKELNQAMEGRCTIAAGEGEDGFVKVTDEAQFKQEIMYPIICQGDVLGTVLMMSIDMKPKFT
DNEKKMVKTAANFLGKHMES
>Mature_180_residues
MKATGIVRRIDDLGRIVIPKEIRRTLHIRETDPMEIFTDAEGQIILKKYSPIGDISTFAGKYAESLSDATGMTVCITDRE
QVIAASGDDKKNLMNKPVTKELNQAMEGRCTIAAGEGEDGFVKVTDEAQFKQEIMYPIICQGDVLGTVLMMSIDMKPKFT
DNEKKMVKTAANFLGKHMES

Specific function: Positive and negative transcriptional regulator of sigma G-dependent genes. May provide a mechanism of feedback control that is important for forespore development [H]

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis AbrB and Abh [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014213
- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 19981; Mature: 19981

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATGIVRRIDDLGRIVIPKEIRRTLHIRETDPMEIFTDAEGQIILKKYSPIGDISTFAG
CCCCHHHHHHHHCCCEECCHHHHHHCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHH
KYAESLSDATGMTVCITDREQVIAASGDDKKNLMNKPVTKELNQAMEGRCTIAAGEGEDG
HHHHHHHCCCCCEEEEECCCEEEEECCCCHHHHHCCCHHHHHHHHHCCCEEEEECCCCCC
FVKVTDEAQFKQEIMYPIICQGDVLGTVLMMSIDMKPKFTDNEKKMVKTAANFLGKHMES
EEEECCHHHHHHHCCCCEEECCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKATGIVRRIDDLGRIVIPKEIRRTLHIRETDPMEIFTDAEGQIILKKYSPIGDISTFAG
CCCCHHHHHHHHCCCEECCHHHHHHCCCCCCCCCEEEECCCCEEEEEECCCCCCHHHHHH
KYAESLSDATGMTVCITDREQVIAASGDDKKNLMNKPVTKELNQAMEGRCTIAAGEGEDG
HHHHHHHCCCCCEEEEECCCEEEEECCCCHHHHHCCCHHHHHHHHHCCCEEEEECCCCCC
FVKVTDEAQFKQEIMYPIICQGDVLGTVLMMSIDMKPKFTDNEKKMVKTAANFLGKHMES
EEEECCHHHHHHHCCCCEEECCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 8755877 [H]