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The map label for this gene is soxS [H]

Identifier: 238917763

GI number: 238917763

Start: 1902043

End: 1902843

Strand: Reverse

Name: soxS [H]

Synonym: EUBELI_01844

Alternate gene names: 238917763

Gene position: 1902843-1902043 (Counterclockwise)

Preceding gene: 238917764

Following gene: 238917762

Centisome position: 88.74

GC content: 37.08

Gene sequence:

>801_bases
ATGCATTTATCATTTATTGATACAAAAGAAGAAATATTAACTTTAAAAAGAAAATCGAAGCATGTCGCTCCGCATTTACA
TAATGCATTGGAGATTGTATGTGTGACAAATGGAACACTGGAGCTTGGAGTTGGTCAAGAGTTATATCACATGGAAAAGG
GAGATATCGGCTTTGTATTTCCGGATATTATCCATCATTATCAGATTTTCTCGCCGGGAGTGAATAAGGCAGTTTACATT
ATTTCTCCACCGTTTGCGATTGGAAAATATGCTGAAATAATACAGACGATGGCACCGGATTACCCTATTATAAAGGCAGA
GATGGTGGAGCCAGAAGTATACCGGGCAATTAATGCCATCTTAGATACAGATCACATGGATATAGCAGTTATACAGGCAT
ATCTGCAGATTGTGATTGCAAGATGCATTGGAAAGCTGAAACTGGTCGAGAAAGGAGATGTGGGAAGTAAAGATCTTGTC
TATCAGGCAGTATCGTACGTGTCTGGTAATTTTAGAAAGAATTTCTCGCTAGATGATATGGCAAGAGATTTGGGAGTGAG
CAAGTATGTTTTATCACGAACATTCTCCAAAACATTCCATCGTAATTTCAATCAATATCTGAATGATACAAGACTAAATT
ATGCTTGCTATCGTTTGGAAAATACCAGTGATGCCATTACAAATATATGCTATGATAGCGGATTTGAAAGTCAGAGAACA
TTCAATCGGGTATTTAAGGAACGATACAAAGTTACACCAAGCGAATACCGAAATACAAGCCGTACAGATATATTATCTTA
A

Upstream 100 bases:

>100_bases
TCCTTTCCTTATTTACAAGCTGATTATAGAATGAATACAATGAGATTGCTTGCCAAATCGAAAGAAAAAGTAGACAAATC
TTGCAAAGGGGGCGTAACCA

Downstream 100 bases:

>100_bases
TTATCAAACATGGAGGCAGAGAAAGGATGCAACGTGAAGCGAAAAAACAGATGCAGGAAACAGGCATCGGCACAAAATCG
CAGCAGGCATTGAAATTACA

Product: two-component system response regulator YesN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MHLSFIDTKEEILTLKRKSKHVAPHLHNALEIVCVTNGTLELGVGQELYHMEKGDIGFVFPDIIHHYQIFSPGVNKAVYI
ISPPFAIGKYAEIIQTMAPDYPIIKAEMVEPEVYRAINAILDTDHMDIAVIQAYLQIVIARCIGKLKLVEKGDVGSKDLV
YQAVSYVSGNFRKNFSLDDMARDLGVSKYVLSRTFSKTFHRNFNQYLNDTRLNYACYRLENTSDAITNICYDSGFESQRT
FNRVFKERYKVTPSEYRNTSRTDILS

Sequences:

>Translated_266_residues
MHLSFIDTKEEILTLKRKSKHVAPHLHNALEIVCVTNGTLELGVGQELYHMEKGDIGFVFPDIIHHYQIFSPGVNKAVYI
ISPPFAIGKYAEIIQTMAPDYPIIKAEMVEPEVYRAINAILDTDHMDIAVIQAYLQIVIARCIGKLKLVEKGDVGSKDLV
YQAVSYVSGNFRKNFSLDDMARDLGVSKYVLSRTFSKTFHRNFNQYLNDTRLNYACYRLENTSDAITNICYDSGFESQRT
FNRVFKERYKVTPSEYRNTSRTDILS
>Mature_266_residues
MHLSFIDTKEEILTLKRKSKHVAPHLHNALEIVCVTNGTLELGVGQELYHMEKGDIGFVFPDIIHHYQIFSPGVNKAVYI
ISPPFAIGKYAEIIQTMAPDYPIIKAEMVEPEVYRAINAILDTDHMDIAVIQAYLQIVIARCIGKLKLVEKGDVGSKDLV
YQAVSYVSGNFRKNFSLDDMARDLGVSKYVLSRTFSKTFHRNFNQYLNDTRLNYACYRLENTSDAITNICYDSGFESQRT
FNRVFKERYKVTPSEYRNTSRTDILS

Specific function: Transcriptional activator of the superoxide response regulon of E.coli that includes at least 10 genes such as sodA, nfo, zwf and micF. Binds the DNA sequence 5'-GCACN(7)CAA-3'. It also facilitates the subsequent binding of RNA polymerase to the micF and

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=105, Percent_Identity=29.5238095238095, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30454; Mature: 30454

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLSFIDTKEEILTLKRKSKHVAPHLHNALEIVCVTNGTLELGVGQELYHMEKGDIGFVF
CCCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEEEECCEEEECCCHHHHHCCCCCCCEEC
PDIIHHYQIFSPGVNKAVYIISPPFAIGKYAEIIQTMAPDYPIIKAEMVEPEVYRAINAI
HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEHHHCCHHHHHHHHHH
LDTDHMDIAVIQAYLQIVIARCIGKLKLVEKGDVGSKDLVYQAVSYVSGNFRKNFSLDDM
HCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHH
ARDLGVSKYVLSRTFSKTFHRNFNQYLNDTRLNYACYRLENTSDAITNICYDSGFESQRT
HHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCHHHH
FNRVFKERYKVTPSEYRNTSRTDILS
HHHHHHHHHCCCHHHHCCCCHHHCCC
>Mature Secondary Structure
MHLSFIDTKEEILTLKRKSKHVAPHLHNALEIVCVTNGTLELGVGQELYHMEKGDIGFVF
CCCCCCCCHHHHHHHHHHHCCCCHHHHCCEEEEEEECCEEEECCCHHHHHCCCCCCCEEC
PDIIHHYQIFSPGVNKAVYIISPPFAIGKYAEIIQTMAPDYPIIKAEMVEPEVYRAINAI
HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEHHHCCHHHHHHHHHH
LDTDHMDIAVIQAYLQIVIARCIGKLKLVEKGDVGSKDLVYQAVSYVSGNFRKNFSLDDM
HCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHH
ARDLGVSKYVLSRTFSKTFHRNFNQYLNDTRLNYACYRLENTSDAITNICYDSGFESQRT
HHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCHHHH
FNRVFKERYKVTPSEYRNTSRTDILS
HHHHHHHHHCCCHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]