Click here to switch to the map view.

The map label for this gene is yjgF [C]

Identifier: 238917738

GI number: 238917738

Start: 1879956

End: 1880333

Strand: Reverse

Name: yjgF [C]

Synonym: EUBELI_01818

Alternate gene names: 238917738

Gene position: 1880333-1879956 (Counterclockwise)

Preceding gene: 238917739

Following gene: 238917737

Centisome position: 87.69

GC content: 39.42

Gene sequence:

>378_bases
ATGCAGAAAGTAATCAGTACAGACAAGGCACCAAGTGCAATCGGACCATATTCACAGGCTATCGAGATTAACAATATGGT
ATATACATCAGGAGTTATCCCTGTAATACCAGCTACAGGTGAAATCGCAGAAGGTGGAGTTGAGGCTCAGGCTGAGCAGG
CATTCCAGAACCTCTGTAATCTTGTTGAGGTTTCAGGCTCTAAGGTAGAGAATATTGTTAAGACAACAGTATTTATTAAA
GAAATGAATGATTTCGGTAAGATTAATGAAATCTACAAGAAATATTTTAAGGAGCCATTTCCAGCACGTTCATGCGTAGA
AGTTGCAAGACTTCCTAAGGATGTTCTTCTTGAAGTGGAAGCAATTGCATGGAAGTAA

Upstream 100 bases:

>100_bases
ATAGTTCTTAAGAAATAGCTTCTTGAATGAATATGATGATTGCGGTACAATATGCTTAATGCGTTTGTAACGTAAAATAT
GTTGAAATAAGGAGATTATT

Downstream 100 bases:

>100_bases
GAAAAGTTAATGTTTTCTTTCCTATATTTATAGTTGGATATATTGCGCTGTCTATACTTGCAGGAAGTGTAATGGCAGTA
CTAGTCAATATGGGAATACC

Product: TdcF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MQKVISTDKAPSAIGPYSQAIEINNMVYTSGVIPVIPATGEIAEGGVEAQAEQAFQNLCNLVEVSGSKVENIVKTTVFIK
EMNDFGKINEIYKKYFKEPFPARSCVEVARLPKDVLLEVEAIAWK

Sequences:

>Translated_125_residues
MQKVISTDKAPSAIGPYSQAIEINNMVYTSGVIPVIPATGEIAEGGVEAQAEQAFQNLCNLVEVSGSKVENIVKTTVFIK
EMNDFGKINEIYKKYFKEPFPARSCVEVARLPKDVLLEVEAIAWK
>Mature_125_residues
MQKVISTDKAPSAIGPYSQAIEINNMVYTSGVIPVIPATGEIAEGGVEAQAEQAFQNLCNLVEVSGSKVENIVKTTVFIK
EMNDFGKINEIYKKYFKEPFPARSCVEVARLPKDVLLEVEAIAWK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=47.9674796747967, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=55.46875, Blast_Score=143, Evalue=3e-36,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=52.34375, Blast_Score=137, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=45.9016393442623, Blast_Score=124, Evalue=9e-30,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=45.9016393442623, Blast_Score=124, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=45.9016393442623, Blast_Score=124, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=47.0588235294118, Blast_Score=110, Evalue=6e-26,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=43.6893203883495, Blast_Score=97, Evalue=8e-22,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=42.741935483871, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13737; Mature: 13737

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVISTDKAPSAIGPYSQAIEINNMVYTSGVIPVIPATGEIAEGGVEAQAEQAFQNLCN
CCCCCCCCCCCCCCCCCHHHEEECCEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
LVEVSGSKVENIVKTTVFIKEMNDFGKINEIYKKYFKEPFPARSCVEVARLPKDVLLEVE
HHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHH
AIAWK
HHHCC
>Mature Secondary Structure
MQKVISTDKAPSAIGPYSQAIEINNMVYTSGVIPVIPATGEIAEGGVEAQAEQAFQNLCN
CCCCCCCCCCCCCCCCCHHHEEECCEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHH
LVEVSGSKVENIVKTTVFIKEMNDFGKINEIYKKYFKEPFPARSCVEVARLPKDVLLEVE
HHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHH
AIAWK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10873488; 11248100 [H]