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The map label for this gene is atpD [H]

Identifier: 238917402

GI number: 238917402

Start: 1536482

End: 1537894

Strand: Reverse

Name: atpD [H]

Synonym: EUBELI_01480

Alternate gene names: 238917402

Gene position: 1537894-1536482 (Counterclockwise)

Preceding gene: 238917403

Following gene: 238917401

Centisome position: 71.72

GC content: 41.97

Gene sequence:

>1413_bases
ATGCGACGGATAGGAGATAATATGAGTAATAAAGGAAAGATTATACAGGTAATGGGACCTGTTGTCGATGTAGCGTTCGA
AGATGAGAACCTTCCGGCAATCAGGGACGCACTTGAAGTTAATAATGGTGATAAAAAATGTGTGATGGAAGTTGCACAGC
ATATCGGTAATGATACAGTCCGTTGTATCATGCTTGCTTCCAGTGAAGGTCTTTGCAGAGATATGGAAGTAACAGCTACA
GGCAGCGGCATTAAGACTCCTGTTGGAGAGAAAACTCTTGGCCGTCTCTTTAATGTATTAGGAGAGGCTATTGATGGCAA
AGAACAGCCAGATGCGGAGGAAAAGTGGGAAATCCACAGAGAACCTCCAACATTTGAAGAACAGAATCCTGCAGAAGAGA
TTCTTGAGACAGGTATCAAGGTAATTGACCTTTTGGCACCTTATGCAAAGGGTGGTAAGATTGGTCTGTTTGGTGGTGCC
GGGGTTGGTAAGACAGTTCTTATTCAGGAACTTATCAGCAATATTGCAACAGAACATGGTGGATATTCAATATTCACAGG
TGTAGGAGAAAGATCAAGAGAAGGTAACGACCTCTGGACAGAAATGAAAGAGTCGGGCGTTCTTGAAAAAACTGCCTTAG
TGTTTGGTCAGATGAATGAACCACCTGGAGCACGTATGCGTGTTGCTGAGACAGGACTTACAATGGCTGAATATTTCCGT
GATGAGAAGCATCAGAATGTGCTTTTATTCATTGATAATATATTCCGTTTCACACAGGCTGGTTCAGAGGTTTCAGCACT
TCTTGGACGTATGCCTTCAGCCGTAGGTTATCAGCCAACACTTGCAACTGAGATGGGTGAATTACAGGAGAGAATTGCTT
CTACAAAGAATGGTTCTGTAACATCAGTACAGGCAGTATATGTACCTGCCGATGACCTTACTGACCCTGCACCTGCAACA
ACATTTGCACATCTTGATGCAACTACAGTTCTTTCAAGAAAGATAGTTGAACAGGGTATCTACCCGGCAGTAGACCCTCT
TGATTCTACATCAAGAATTCTTGAGCCGGACATTGTAGGTGAGGAGCATTATGAGGTAGCAAGAAAGGTTCAGGAAATCC
TCCAGAAGTACAAGGAATTACAGGATATCATTGCTATTCTTGGTATGGAAGAGCTTGCAGATGAAGATAAGGTTACAGTA
TTCAGAGCAAGAAAGATTCAGAAATTCTTATCACAGCCATTCCATGTTGCTGAGAACTTCACAGGTATTCCTGGTGTATA
TGTTCCATTAAAGGAGACTATAAGAGGTTTCAAGGCAATTATTGATGGTGAGATGGACGAATATCCTGAGAACGCATTTT
TCAATGTAGGAACTATAGATGATGTTATTAAAAAGGCTGAGAAGATGCAGTAA

Upstream 100 bases:

>100_bases
TTGATATACAGTATAACAGAGCCAGACAGGCTTCAATCACACAGGAAATAACTGAGGTTATCGCTGGTGCGAAGTCGCAG
AAGAAGAAACGAAAGAAATA

Downstream 100 bases:

>100_bases
CATCCTGCCAGAAAGGAAAAACTAATGGCTACAAGTTCATTTTATTTAAAAGTAATATCAGCTAACCGGGTGTTTTTCGC
TGGCAAATGCCGTTCTCTGA

Product: F-type H+-transporting ATPase beta chain

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MRRIGDNMSNKGKIIQVMGPVVDVAFEDENLPAIRDALEVNNGDKKCVMEVAQHIGNDTVRCIMLASSEGLCRDMEVTAT
GSGIKTPVGEKTLGRLFNVLGEAIDGKEQPDAEEKWEIHREPPTFEEQNPAEEILETGIKVIDLLAPYAKGGKIGLFGGA
GVGKTVLIQELISNIATEHGGYSIFTGVGERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFR
DEKHQNVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSVTSVQAVYVPADDLTDPAPAT
TFAHLDATTVLSRKIVEQGIYPAVDPLDSTSRILEPDIVGEEHYEVARKVQEILQKYKELQDIIAILGMEELADEDKVTV
FRARKIQKFLSQPFHVAENFTGIPGVYVPLKETIRGFKAIIDGEMDEYPENAFFNVGTIDDVIKKAEKMQ

Sequences:

>Translated_470_residues
MRRIGDNMSNKGKIIQVMGPVVDVAFEDENLPAIRDALEVNNGDKKCVMEVAQHIGNDTVRCIMLASSEGLCRDMEVTAT
GSGIKTPVGEKTLGRLFNVLGEAIDGKEQPDAEEKWEIHREPPTFEEQNPAEEILETGIKVIDLLAPYAKGGKIGLFGGA
GVGKTVLIQELISNIATEHGGYSIFTGVGERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFR
DEKHQNVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSVTSVQAVYVPADDLTDPAPAT
TFAHLDATTVLSRKIVEQGIYPAVDPLDSTSRILEPDIVGEEHYEVARKVQEILQKYKELQDIIAILGMEELADEDKVTV
FRARKIQKFLSQPFHVAENFTGIPGVYVPLKETIRGFKAIIDGEMDEYPENAFFNVGTIDDVIKKAEKMQ
>Mature_470_residues
MRRIGDNMSNKGKIIQVMGPVVDVAFEDENLPAIRDALEVNNGDKKCVMEVAQHIGNDTVRCIMLASSEGLCRDMEVTAT
GSGIKTPVGEKTLGRLFNVLGEAIDGKEQPDAEEKWEIHREPPTFEEQNPAEEILETGIKVIDLLAPYAKGGKIGLFGGA
GVGKTVLIQELISNIATEHGGYSIFTGVGERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFR
DEKHQNVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSVTSVQAVYVPADDLTDPAPAT
TFAHLDATTVLSRKIVEQGIYPAVDPLDSTSRILEPDIVGEEHYEVARKVQEILQKYKELQDIIAILGMEELADEDKVTV
FRARKIQKFLSQPFHVAENFTGIPGVYVPLKETIRGFKAIIDGEMDEYPENAFFNVGTIDDVIKKAEKMQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=464, Percent_Identity=68.3189655172414, Blast_Score=635, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=328, Percent_Identity=30.4878048780488, Blast_Score=134, Evalue=1e-31,
Organism=Homo sapiens, GI19913428, Length=355, Percent_Identity=26.1971830985915, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI19913426, Length=387, Percent_Identity=25.5813953488372, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI50345984, Length=289, Percent_Identity=26.643598615917, Blast_Score=99, Evalue=8e-21,
Organism=Homo sapiens, GI4757810, Length=289, Percent_Identity=26.643598615917, Blast_Score=99, Evalue=8e-21,
Organism=Escherichia coli, GI1790170, Length=458, Percent_Identity=66.1572052401747, Blast_Score=625, Evalue=1e-180,
Organism=Escherichia coli, GI1788251, Length=308, Percent_Identity=30.8441558441558, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1790172, Length=392, Percent_Identity=24.7448979591837, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=465, Percent_Identity=66.8817204301075, Blast_Score=628, Evalue=1e-180,
Organism=Caenorhabditis elegans, GI17565854, Length=322, Percent_Identity=32.2981366459627, Blast_Score=137, Evalue=9e-33,
Organism=Caenorhabditis elegans, GI17570191, Length=416, Percent_Identity=25, Blast_Score=129, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17510931, Length=349, Percent_Identity=24.6418338108883, Blast_Score=120, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI71988080, Length=360, Percent_Identity=23.3333333333333, Blast_Score=96, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI71988063, Length=360, Percent_Identity=23.3333333333333, Blast_Score=95, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI71988074, Length=266, Percent_Identity=23.6842105263158, Blast_Score=77, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=457, Percent_Identity=69.1466083150985, Blast_Score=639, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=354, Percent_Identity=27.1186440677966, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6319370, Length=366, Percent_Identity=25.4098360655738, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6320016, Length=262, Percent_Identity=27.8625954198473, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=67.741935483871, Blast_Score=638, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=466, Percent_Identity=64.1630901287554, Blast_Score=590, Evalue=1e-169,
Organism=Drosophila melanogaster, GI24583988, Length=348, Percent_Identity=29.8850574712644, Blast_Score=140, Evalue=1e-33,
Organism=Drosophila melanogaster, GI24583986, Length=348, Percent_Identity=29.8850574712644, Blast_Score=140, Evalue=1e-33,
Organism=Drosophila melanogaster, GI24583984, Length=348, Percent_Identity=29.8850574712644, Blast_Score=140, Evalue=1e-33,
Organism=Drosophila melanogaster, GI24583992, Length=322, Percent_Identity=31.055900621118, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI20129479, Length=347, Percent_Identity=28.5302593659942, Blast_Score=132, Evalue=6e-31,
Organism=Drosophila melanogaster, GI281361666, Length=356, Percent_Identity=27.247191011236, Blast_Score=128, Evalue=9e-30,
Organism=Drosophila melanogaster, GI24646341, Length=356, Percent_Identity=27.247191011236, Blast_Score=128, Evalue=9e-30,
Organism=Drosophila melanogaster, GI17136796, Length=356, Percent_Identity=27.247191011236, Blast_Score=128, Evalue=9e-30,
Organism=Drosophila melanogaster, GI24658560, Length=288, Percent_Identity=26.0416666666667, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=53.2608695652174, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51695; Mature: 51695

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRIGDNMSNKGKIIQVMGPVVDVAFEDENLPAIRDALEVNNGDKKCVMEVAQHIGNDTV
CCCCCCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCE
RCIMLASSEGLCRDMEVTATGSGIKTPVGEKTLGRLFNVLGEAIDGKEQPDAEEKWEIHR
EEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
EPPTFEEQNPAEEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELISNIATEHG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
GYSIFTGVGERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFR
CEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEHHHCCHHHHHHH
DEKHQNVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSV
HHCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIVEQGIYPAVDPLDSTSRILEPDIVG
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCC
EEHYEVARKVQEILQKYKELQDIIAILGMEELADEDKVTVFRARKIQKFLSQPFHVAENF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC
TGIPGVYVPLKETIRGFKAIIDGEMDEYPENAFFNVGTIDDVIKKAEKMQ
CCCCCEEECHHHHHHHHHHHHCCCHHCCCCCCEEECCCHHHHHHHHHCCC
>Mature Secondary Structure
MRRIGDNMSNKGKIIQVMGPVVDVAFEDENLPAIRDALEVNNGDKKCVMEVAQHIGNDTV
CCCCCCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCE
RCIMLASSEGLCRDMEVTATGSGIKTPVGEKTLGRLFNVLGEAIDGKEQPDAEEKWEIHR
EEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC
EPPTFEEQNPAEEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELISNIATEHG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
GYSIFTGVGERSREGNDLWTEMKESGVLEKTALVFGQMNEPPGARMRVAETGLTMAEYFR
CEEEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEHHHCCHHHHHHH
DEKHQNVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERIASTKNGSV
HHCCCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIVEQGIYPAVDPLDSTSRILEPDIVG
EEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCC
EEHYEVARKVQEILQKYKELQDIIAILGMEELADEDKVTVFRARKIQKFLSQPFHVAENF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC
TGIPGVYVPLKETIRGFKAIIDGEMDEYPENAFFNVGTIDDVIKKAEKMQ
CCCCCEEECHHHHHHHHHHHHCCCHHCCCCCCEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]