| Definition | Eubacterium eligens ATCC 27750 chromosome, complete genome. |
|---|---|
| Accession | NC_012778 |
| Length | 2,144,190 |
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The map label for this gene is secDF [H]
Identifier: 238917315
GI number: 238917315
Start: 1433264
End: 1435504
Strand: Reverse
Name: secDF [H]
Synonym: EUBELI_01390
Alternate gene names: 238917315
Gene position: 1435504-1433264 (Counterclockwise)
Preceding gene: 238917316
Following gene: 238917314
Centisome position: 66.95
GC content: 36.81
Gene sequence:
>2241_bases ATGAAGTACAGTTTACCTAAGAAGATTATTTATTCAATAATCGTTGCTGTTTTACTGGTTGGACTTGTATTAACAGCATT TTTCGGACTTAATGGAAAGGGATACGGAAGCACCTATGATATAGATCTTGGTCTTGATCTTGCAGGTGGTGTAAGTATCA CATATCAGATTAAGGAAGATAACTTTACATCACAGGATGTAGAGGATACAATCTATAAGCTTCAGAAGCGAGTAGAAGGA AAGAGTACAGAGTCACAGGTTTATAAGGAAGGTGACAACAGAATTACTGTTGAGATTCCTGGAGTAACAGATGCTAATGA GATTCTTAAGGAACTTGGTACACCAGGTTCATTGGAATTCCTCGATTCTACAGGATATACAGCATTCTCACAGGGCAATG ATTACACACCACTTCTTACAGGTTCAGATGTAAAGGCAGCACAGGCTTACACTGATACTAACAGTTCAGAAGATACACCT TATGGTGTCCAGCTTACATTTACAGATGATGGTGCTACTAAATTCTATGATGCAACATCAGCTAATATTGGTAACAGAAT ATATATAGTATACGACGGAGAAGTTGTAAGTGCACCTAACGTTAAGACAGCTATATCAGGTGGTACAGCAACTATCACAG GTATGGAATCATTCGATGAGGCAGATAACCTTGCAACATATATAAGAGTTGGTTCAATTCCTCTTACACTTGAAGAAGTA AGCTCTAACATCGTTGGAGCACAGCTTGGACATGCTGCTATCAAATCAAGTTTAATTGCTGCTGCTATAGGTCTTGCATT ACTCTGCTTATTCATGATTGTTATGTTCAGAATTCCTGGACTTGTTGCAACATTATCACTGATTATCTATACATCACTTG TTTTATTCCTTGTAAGTGTATATGATCTTACTCTTACACTTCCGGGTATTGCCGGTATTATTCTTGGTATTGGTATGGCA GTAGATGGTAATGTTATTATCTACACAAGAATAAGAGAAGAGATTGGTGCCGGAAAGTCTGTAGAAAGTGCTATTCTTTC AGGTTATAACAAGGCAACATCATCTATAGTAGATGGTAACGTAACAACACTTATCGCTGCTTTAGTATTGTACATATTCG GTACAGGTCCAGTTAAGGGATTTGCTACAACTCTTGCAGTTGGTAATATAGTATCAATTTTTACATCACTTGTTATTACT AAGGTTATTATGAAGCTTTTATATAACTTTGGTATCAGGGATGCTAAGTGGTATGGTAAGAATGTATACAGAAAGACGCT TGATGTTCTTAGCATTAAGAAATGGGCTGCGATTGGCTCAGCAGTAGTTATTGCTGCAGGTATCATAACTATGGCAGTTC AGGCTGGTCTTGGAAACAGAGCATTAAATTTCAGCCTTGAGTTTGTTGGTGGTTCAACAACAACATTTACATTTGATAAA GAATATACAGCAGAAGAGATTGAGGATAATATCATTCCTGTAATCAGAGATGCTGCAGGTATTACAGAGGTTCAGCAGCA GAAGGTTGCAGATTCAACACAGGTTTCATTCAAGACATCAGATCTTTCACTTGAACAGAGAGAAGCTATTGAAAATGCGG TTACAGCTAAGTATCCAATCAAAGATGGAACAATCGTTGAGACAGATACAATCAGCTCATCAGTTTCTGCAACAGTTAAG AGAGATGCTATTCTTTCAGTTATACTTGCTACAATCTGTATGTTGATATATATCTTTGTAAGATTCCGTGATATCAGATT TGCACTTGCAGCTGTATTAGCACTTCTTCATGATGTACTTGTTGTTCTTGCATTCTATGCATTTGCAAGAATTCCGGTTG GAACAACATTTATTGCATGTATGCTTACAATAGTAGGTTATTCTATTAACGGTACAATTATTATCTTTGACAGAATAAGA GAGCAGTTAAAGACAGCTAATTCAAAGACTAACATTACAGAGCTTGTTAACTCATCAATAACAAGCACAATGTCAAGAAC AGTATATACATCTATAACAACACTTATAATGCTTATTGTTCTTTTCATTATGGGTGTAACTTCGGTTAAGGAGTTCACAC TTCCACTTATCGTAGGTATTGTTGTTGGTGCTTACTCATCAGTATGCTTAACAAGTGCTATGTGGTACGTAATGGGTGGT AAGAAGAGAGGCGTTGTAGAAGAGAATAATAAAAAAGCAGCTTCCAAGAAAGAGGTTTTTGAAGACGGTTCTCAGGTTTA A
Upstream 100 bases:
>100_bases TGATGTTGGATGTGAACTTCAGAAAAAGCGTATAGAATGTGCAATAATGATTCGTGCGGCCATGGCTGAGGAAGAATAAG TATAAGGGAGAGTTTTTAAC
Downstream 100 bases:
>100_bases TTAACAGATACAATAAGTTTATGACATGGCGGGGATTGTATATCAGTTCCCGCCATAATTGGTTTAATAATGAAACAGGG AGAAAAGAGTGAAAAGCAAC
Product: preprotein translocase subunit SecD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 746; Mature: 746
Protein sequence:
>746_residues MKYSLPKKIIYSIIVAVLLVGLVLTAFFGLNGKGYGSTYDIDLGLDLAGGVSITYQIKEDNFTSQDVEDTIYKLQKRVEG KSTESQVYKEGDNRITVEIPGVTDANEILKELGTPGSLEFLDSTGYTAFSQGNDYTPLLTGSDVKAAQAYTDTNSSEDTP YGVQLTFTDDGATKFYDATSANIGNRIYIVYDGEVVSAPNVKTAISGGTATITGMESFDEADNLATYIRVGSIPLTLEEV SSNIVGAQLGHAAIKSSLIAAAIGLALLCLFMIVMFRIPGLVATLSLIIYTSLVLFLVSVYDLTLTLPGIAGIILGIGMA VDGNVIIYTRIREEIGAGKSVESAILSGYNKATSSIVDGNVTTLIAALVLYIFGTGPVKGFATTLAVGNIVSIFTSLVIT KVIMKLLYNFGIRDAKWYGKNVYRKTLDVLSIKKWAAIGSAVVIAAGIITMAVQAGLGNRALNFSLEFVGGSTTTFTFDK EYTAEEIEDNIIPVIRDAAGITEVQQQKVADSTQVSFKTSDLSLEQREAIENAVTAKYPIKDGTIVETDTISSSVSATVK RDAILSVILATICMLIYIFVRFRDIRFALAAVLALLHDVLVVLAFYAFARIPVGTTFIACMLTIVGYSINGTIIIFDRIR EQLKTANSKTNITELVNSSITSTMSRTVYTSITTLIMLIVLFIMGVTSVKEFTLPLIVGIVVGAYSSVCLTSAMWYVMGG KKRGVVEENNKKAASKKEVFEDGSQV
Sequences:
>Translated_746_residues MKYSLPKKIIYSIIVAVLLVGLVLTAFFGLNGKGYGSTYDIDLGLDLAGGVSITYQIKEDNFTSQDVEDTIYKLQKRVEG KSTESQVYKEGDNRITVEIPGVTDANEILKELGTPGSLEFLDSTGYTAFSQGNDYTPLLTGSDVKAAQAYTDTNSSEDTP YGVQLTFTDDGATKFYDATSANIGNRIYIVYDGEVVSAPNVKTAISGGTATITGMESFDEADNLATYIRVGSIPLTLEEV SSNIVGAQLGHAAIKSSLIAAAIGLALLCLFMIVMFRIPGLVATLSLIIYTSLVLFLVSVYDLTLTLPGIAGIILGIGMA VDGNVIIYTRIREEIGAGKSVESAILSGYNKATSSIVDGNVTTLIAALVLYIFGTGPVKGFATTLAVGNIVSIFTSLVIT KVIMKLLYNFGIRDAKWYGKNVYRKTLDVLSIKKWAAIGSAVVIAAGIITMAVQAGLGNRALNFSLEFVGGSTTTFTFDK EYTAEEIEDNIIPVIRDAAGITEVQQQKVADSTQVSFKTSDLSLEQREAIENAVTAKYPIKDGTIVETDTISSSVSATVK RDAILSVILATICMLIYIFVRFRDIRFALAAVLALLHDVLVVLAFYAFARIPVGTTFIACMLTIVGYSINGTIIIFDRIR EQLKTANSKTNITELVNSSITSTMSRTVYTSITTLIMLIVLFIMGVTSVKEFTLPLIVGIVVGAYSSVCLTSAMWYVMGG KKRGVVEENNKKAASKKEVFEDGSQV >Mature_746_residues MKYSLPKKIIYSIIVAVLLVGLVLTAFFGLNGKGYGSTYDIDLGLDLAGGVSITYQIKEDNFTSQDVEDTIYKLQKRVEG KSTESQVYKEGDNRITVEIPGVTDANEILKELGTPGSLEFLDSTGYTAFSQGNDYTPLLTGSDVKAAQAYTDTNSSEDTP YGVQLTFTDDGATKFYDATSANIGNRIYIVYDGEVVSAPNVKTAISGGTATITGMESFDEADNLATYIRVGSIPLTLEEV SSNIVGAQLGHAAIKSSLIAAAIGLALLCLFMIVMFRIPGLVATLSLIIYTSLVLFLVSVYDLTLTLPGIAGIILGIGMA VDGNVIIYTRIREEIGAGKSVESAILSGYNKATSSIVDGNVTTLIAALVLYIFGTGPVKGFATTLAVGNIVSIFTSLVIT KVIMKLLYNFGIRDAKWYGKNVYRKTLDVLSIKKWAAIGSAVVIAAGIITMAVQAGLGNRALNFSLEFVGGSTTTFTFDK EYTAEEIEDNIIPVIRDAAGITEVQQQKVADSTQVSFKTSDLSLEQREAIENAVTAKYPIKDGTIVETDTISSSVSATVK RDAILSVILATICMLIYIFVRFRDIRFALAAVLALLHDVLVVLAFYAFARIPVGTTFIACMLTIVGYSINGTIIIFDRIR EQLKTANSKTNITELVNSSITSTMSRTVYTSITTLIMLIVLFIMGVTSVKEFTLPLIVGIVVGAYSSVCLTSAMWYVMGG KKRGVVEENNKKAASKKEVFEDGSQV
Specific function: Required for efficient translocation of secretory pre- proteins under conditions of hypersecretion but is not required for the release of mature proteins from the membrane [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the secD/secF family. SecF subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=386, Percent_Identity=33.160621761658, Blast_Score=174, Evalue=1e-44, Organism=Escherichia coli, GI1786610, Length=324, Percent_Identity=27.4691358024691, Blast_Score=131, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 - InterPro: IPR005665 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 80122; Mature: 80122
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYSLPKKIIYSIIVAVLLVGLVLTAFFGLNGKGYGSTYDIDLGLDLAGGVSITYQIKED CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCEEEEEEEECC NFTSQDVEDTIYKLQKRVEGKSTESQVYKEGDNRITVEIPGVTDANEILKELGTPGSLEF CCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCEEE LDSTGYTAFSQGNDYTPLLTGSDVKAAQAYTDTNSSEDTPYGVQLTFTDDGATKFYDATS ECCCCCEEECCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCEEECCCC ANIGNRIYIVYDGEVVSAPNVKTAISGGTATITGMESFDEADNLATYIRVGSIPLTLEEV CCCCCEEEEEECCEEECCCCCCEEECCCCEEEECCHHHHHHHHHEEEEEECCCCEEHHHH SSNIVGAQLGHAAIKSSLIAAAIGLALLCLFMIVMFRIPGLVATLSLIIYTSLVLFLVSV HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH YDLTLTLPGIAGIILGIGMAVDGNVIIYTRIREEIGAGKSVESAILSGYNKATSSIVDGN HHHHHHHHHHHHHHHHHCEEECCCEEEEEEEHHHHCCCCHHHHHHHHCCHHHHHHHCCCC VTTLIAALVLYIFGTGPVKGFATTLAVGNIVSIFTSLVITKVIMKLLYNFGIRDAKWYGK HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH NVYRKTLDVLSIKKWAAIGSAVVIAAGIITMAVQAGLGNRALNFSLEFVGGSTTTFTFDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECC EYTAEEIEDNIIPVIRDAAGITEVQQQKVADSTQVSFKTSDLSLEQREAIENAVTAKYPI CCCHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC KDGTIVETDTISSSVSATVKRDAILSVILATICMLIYIFVRFRDIRFALAAVLALLHDVL CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVLAFYAFARIPVGTTFIACMLTIVGYSINGTIIIFDRIREQLKTANSKTNITELVNSSI HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHH TSTMSRTVYTSITTLIMLIVLFIMGVTSVKEFTLPLIVGIVVGAYSSVCLTSAMWYVMGG HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KKRGVVEENNKKAASKKEVFEDGSQV CCCCCCCCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure MKYSLPKKIIYSIIVAVLLVGLVLTAFFGLNGKGYGSTYDIDLGLDLAGGVSITYQIKED CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCEEEEEEEECC NFTSQDVEDTIYKLQKRVEGKSTESQVYKEGDNRITVEIPGVTDANEILKELGTPGSLEF CCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCEEE LDSTGYTAFSQGNDYTPLLTGSDVKAAQAYTDTNSSEDTPYGVQLTFTDDGATKFYDATS ECCCCCEEECCCCCCCCEEECCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCEEECCCC ANIGNRIYIVYDGEVVSAPNVKTAISGGTATITGMESFDEADNLATYIRVGSIPLTLEEV CCCCCEEEEEECCEEECCCCCCEEECCCCEEEECCHHHHHHHHHEEEEEECCCCEEHHHH SSNIVGAQLGHAAIKSSLIAAAIGLALLCLFMIVMFRIPGLVATLSLIIYTSLVLFLVSV HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH YDLTLTLPGIAGIILGIGMAVDGNVIIYTRIREEIGAGKSVESAILSGYNKATSSIVDGN HHHHHHHHHHHHHHHHHCEEECCCEEEEEEEHHHHCCCCHHHHHHHHCCHHHHHHHCCCC VTTLIAALVLYIFGTGPVKGFATTLAVGNIVSIFTSLVITKVIMKLLYNFGIRDAKWYGK HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH NVYRKTLDVLSIKKWAAIGSAVVIAAGIITMAVQAGLGNRALNFSLEFVGGSTTTFTFDK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCEEEEEECC EYTAEEIEDNIIPVIRDAAGITEVQQQKVADSTQVSFKTSDLSLEQREAIENAVTAKYPI CCCHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC KDGTIVETDTISSSVSATVKRDAILSVILATICMLIYIFVRFRDIRFALAAVLALLHDVL CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVLAFYAFARIPVGTTFIACMLTIVGYSINGTIIIFDRIREQLKTANSKTNITELVNSSI HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHH TSTMSRTVYTSITTLIMLIVLFIMGVTSVKEFTLPLIVGIVVGAYSSVCLTSAMWYVMGG HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KKRGVVEENNKKAASKKEVFEDGSQV CCCCCCCCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9694879; 9384377 [H]