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The map label for this gene is yrvN [H]

Identifier: 238917273

GI number: 238917273

Start: 1384580

End: 1385947

Strand: Reverse

Name: yrvN [H]

Synonym: EUBELI_01348

Alternate gene names: 238917273

Gene position: 1385947-1384580 (Counterclockwise)

Preceding gene: 238917274

Following gene: 238917272

Centisome position: 64.64

GC content: 38.3

Gene sequence:

>1368_bases
TTGGAACAGAACTTAAATAAATGTTTTGTGGATAAGGAATTGATTATGGATTTATTTGAATACATGAGGGAAAACAATAA
GAACAATGAGTCTCCGCTTGCGATGAGATTACGACCAGAAACTCTTGAGGAGATGGTTGGACAGTCACATATAGTTGGTA
AAGATAAACTGCTTTACAGGGCTATTAAAGCTGATAAGCTAAGTTCAGTTATTTTTTATGGACCGCCGGGAACAGGAAAA
ACTACACTTGCAAGAATTATAGCCAATACAACGAGTGCAGAGTTCTGTCAGGTTAATGCGACAGTAGCAGGCAAAAAGGA
CATGGAAGAGGTTGTTGCAAAAGCAAAGGACAATCTTGGAATGTATGGAAGAAAAACGATACTTTTTGTAGATGAGATTC
ATAGATTTAATAAAGGTCAGCAGGATTATCTGTTACCTTTCGTTGAGGATGGAACTATAATTCTTATTGGCGCGACCACG
GAGAATCCATATTTTGAAGTAAACGGGGCTTTAATATCAAGGTCAATAATATTTGAGTTGAAGCCTCTTGAAAAAGACGA
TATAAAGACAATAATAAAAAGAGCTGTATATGACGAAAAGAAAGGTATGGGGAGTTATAAGGCGGTAATAGATGATGATG
CACTGGAGTTCTTAGCTGATATATCCAATGGGGATGCAAGAAATGCACTTAATGCCGTAGAGCTTGGTATACTTACGACA
GACAGGTCAGAGGATGGATTTATCCATATAGACATTGAGACAGCGCAGGAATGTATCCAGAAACGTTCAGTCAGATATGA
TAAAGAGGGCGATAACCATTATGATACAATATCTGCATTTATTAAGAGTATGCGAGGATCAGATCCGGATGCTGTAAGCT
ATTATCTTGCCAAAATGTTATATGCAGGTGAAGATATAAAATTCATTGCCAGAAGAATTATGATATGTGCAAGTGAGGAT
GTAGGCAATGCGGATCCTAATGCATTGCAGGTGGCAGTTGCTGCAGCACAGGCTGTTGAAAGGATAGGAATGCCTGAAGC
ACGGATAATACTTAGTCAGGCAGCACTTTATATTGCCACTGCGCCTAAGAGCAATTCGTGTATTATGGCAATTGATAAGG
CAATGGATGTGGTTAAAAATTCAAAGACTGCGCCTGTGCCTGTACATTTGCAGGATGCACATTATAAAGGAAGTGCAAAA
CTTGGACATGGAATAGGATATAAATATGCACATGACTATCCTAATCATTTTGTAAAACAGCAGTATCTTCCTGATGCATA
TGTGGATGAGAAATTTTACGAACCATCTGATATGGGATATGAGAAGGACATTAAGAAACATTTGGAGAAGATTAATTCGG
AGGCATAG

Upstream 100 bases:

>100_bases
AAGAACAGAATATATTCATATGATTCTGATAACATACTGTATTCTAATACACTTAAAGGCAATAACAGCAGTCAGATTGG
ATATGTTGACAGGCTGTGGC

Downstream 100 bases:

>100_bases
TTTTCAATGAGGGATTACATTAACAGACTATCAAGAGGTAAATCAATTATTGAAGTTCCTAAACTGACATTTGAGAATGA
GCAGGCAGCAATGAATGTTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MEQNLNKCFVDKELIMDLFEYMRENNKNNESPLAMRLRPETLEEMVGQSHIVGKDKLLYRAIKADKLSSVIFYGPPGTGK
TTLARIIANTTSAEFCQVNATVAGKKDMEEVVAKAKDNLGMYGRKTILFVDEIHRFNKGQQDYLLPFVEDGTIILIGATT
ENPYFEVNGALISRSIIFELKPLEKDDIKTIIKRAVYDEKKGMGSYKAVIDDDALEFLADISNGDARNALNAVELGILTT
DRSEDGFIHIDIETAQECIQKRSVRYDKEGDNHYDTISAFIKSMRGSDPDAVSYYLAKMLYAGEDIKFIARRIMICASED
VGNADPNALQVAVAAAQAVERIGMPEARIILSQAALYIATAPKSNSCIMAIDKAMDVVKNSKTAPVPVHLQDAHYKGSAK
LGHGIGYKYAHDYPNHFVKQQYLPDAYVDEKFYEPSDMGYEKDIKKHLEKINSEA

Sequences:

>Translated_455_residues
MEQNLNKCFVDKELIMDLFEYMRENNKNNESPLAMRLRPETLEEMVGQSHIVGKDKLLYRAIKADKLSSVIFYGPPGTGK
TTLARIIANTTSAEFCQVNATVAGKKDMEEVVAKAKDNLGMYGRKTILFVDEIHRFNKGQQDYLLPFVEDGTIILIGATT
ENPYFEVNGALISRSIIFELKPLEKDDIKTIIKRAVYDEKKGMGSYKAVIDDDALEFLADISNGDARNALNAVELGILTT
DRSEDGFIHIDIETAQECIQKRSVRYDKEGDNHYDTISAFIKSMRGSDPDAVSYYLAKMLYAGEDIKFIARRIMICASED
VGNADPNALQVAVAAAQAVERIGMPEARIILSQAALYIATAPKSNSCIMAIDKAMDVVKNSKTAPVPVHLQDAHYKGSAK
LGHGIGYKYAHDYPNHFVKQQYLPDAYVDEKFYEPSDMGYEKDIKKHLEKINSEA
>Mature_455_residues
MEQNLNKCFVDKELIMDLFEYMRENNKNNESPLAMRLRPETLEEMVGQSHIVGKDKLLYRAIKADKLSSVIFYGPPGTGK
TTLARIIANTTSAEFCQVNATVAGKKDMEEVVAKAKDNLGMYGRKTILFVDEIHRFNKGQQDYLLPFVEDGTIILIGATT
ENPYFEVNGALISRSIIFELKPLEKDDIKTIIKRAVYDEKKGMGSYKAVIDDDALEFLADISNGDARNALNAVELGILTT
DRSEDGFIHIDIETAQECIQKRSVRYDKEGDNHYDTISAFIKSMRGSDPDAVSYYLAKMLYAGEDIKFIARRIMICASED
VGNADPNALQVAVAAAQAVERIGMPEARIILSQAALYIATAPKSNSCIMAIDKAMDVVKNSKTAPVPVHLQDAHYKGSAK
LGHGIGYKYAHDYPNHFVKQQYLPDAYVDEKFYEPSDMGYEKDIKKHLEKINSEA

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=41.6475972540046, Blast_Score=316, Evalue=3e-86,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=37.5286041189931, Blast_Score=266, Evalue=4e-71,
Organism=Escherichia coli, GI1787119, Length=422, Percent_Identity=43.6018957345972, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1788167, Length=153, Percent_Identity=33.9869281045752, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=445, Percent_Identity=39.1011235955056, Blast_Score=298, Evalue=9e-82,
Organism=Saccharomyces cerevisiae, GI6324039, Length=281, Percent_Identity=27.0462633451957, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 50860; Mature: 50860

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQNLNKCFVDKELIMDLFEYMRENNKNNESPLAMRLRPETLEEMVGQSHIVGKDKLLYR
CCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCCCCHHHHHHH
AIKADKLSSVIFYGPPGTGKTTLARIIANTTSAEFCQVNATVAGKKDMEEVVAKAKDNLG
HHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCC
MYGRKTILFVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALISRSIIFEL
CCCCEEEEEHHHHHHHCCCCCCCCCEEECCCEEEEEEECCCCCCEEECCHHEEEEEEEEE
KPLEKDDIKTIIKRAVYDEKKGMGSYKAVIDDDALEFLADISNGDARNALNAVELGILTT
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHEEEEEEE
DRSEDGFIHIDIETAQECIQKRSVRYDKEGDNHYDTISAFIKSMRGSDPDAVSYYLAKML
CCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YAGEDIKFIARRIMICASEDVGNADPNALQVAVAAAQAVERIGMPEARIILSQAALYIAT
HCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEEE
APKSNSCIMAIDKAMDVVKNSKTAPVPVHLQDAHYKGSAKLGHGIGYKYAHDYPNHFVKQ
CCCCCCEEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QYLPDAYVDEKFYEPSDMGYEKDIKKHLEKINSEA
HCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEQNLNKCFVDKELIMDLFEYMRENNKNNESPLAMRLRPETLEEMVGQSHIVGKDKLLYR
CCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCCCCHHHHHHH
AIKADKLSSVIFYGPPGTGKTTLARIIANTTSAEFCQVNATVAGKKDMEEVVAKAKDNLG
HHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCC
MYGRKTILFVDEIHRFNKGQQDYLLPFVEDGTIILIGATTENPYFEVNGALISRSIIFEL
CCCCEEEEEHHHHHHHCCCCCCCCCEEECCCEEEEEEECCCCCCEEECCHHEEEEEEEEE
KPLEKDDIKTIIKRAVYDEKKGMGSYKAVIDDDALEFLADISNGDARNALNAVELGILTT
CCCCHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHEEEEEEE
DRSEDGFIHIDIETAQECIQKRSVRYDKEGDNHYDTISAFIKSMRGSDPDAVSYYLAKML
CCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YAGEDIKFIARRIMICASEDVGNADPNALQVAVAAAQAVERIGMPEARIILSQAALYIAT
HCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEEE
APKSNSCIMAIDKAMDVVKNSKTAPVPVHLQDAHYKGSAKLGHGIGYKYAHDYPNHFVKQ
CCCCCCEEEEHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QYLPDAYVDEKFYEPSDMGYEKDIKKHLEKINSEA
HCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]