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The map label for this gene is yhdW [H]

Identifier: 238917200

GI number: 238917200

Start: 1309708

End: 1311519

Strand: Reverse

Name: yhdW [H]

Synonym: EUBELI_01273

Alternate gene names: 238917200

Gene position: 1311519-1309708 (Counterclockwise)

Preceding gene: 238917201

Following gene: 238917199

Centisome position: 61.17

GC content: 32.84

Gene sequence:

>1812_bases
ATGATTTTTAAAAAGTTACGAAACAATTTTAGTCTTTTAATTGACAGCAGCAGGCATGTATGGACATTTGAACTGGCATA
CAAGCTTGTTGCTTTTGCTGTTATATTCCCTATTGTTTTATTTGCAATTAATTTTCTTATGAAGATAGCAGGAGTGAACT
ATCTTACTAATGAATATATTCAGAGAGCAATGACACACCCTGTAGTCATATTTGCAATTTTTCTTGCTGTGGGTATATTT
GTATTCTATTGCACTTATGAGATGACATATCTTTCAGTCTGTTTCGAGACAAAGAGAACATCATGTAATGCATCTGTTGT
TGATATATTTTATAATTCTTATAAGGTTTTTAAAAATGTTTTTAAGCCAAGGCATGTAGGTCTGAGTATATTTTACTTCA
TATCAATTCTGGCTTCCAATGTAACTGTATGGTTTAATGTCTTATACAGTGAGACTAATACTAACTTAATTAAAATGTAT
ATCATTAGGAATCACTGGTATATTAAAGCTGAAGTTATATTTGTGTTTGTCATTATATACGCAATTGTAATTCCTGGAAT
ATATGCAATGAATATATGCATGATGGAAGGACTGGGATTTAGGGAAGCATATAAGAAAAGTGCCCGTATGGTTAAGAAGC
ATCCAATGGGAACAATATCAGCACTTGTTGTGTATAATCTGGTTATGCTTGCAATTATTGGAATAACTTATGTGCTTATA
TCAGTATTTCTTGTTGCAGGTGTTAAGATTCTTAATATGGCATATCTTGGAAATGCTATATTTCTGTCTGCATTAAGGAC
AGAAAGACTAATTATAAAATGTATTCTTGTATGTGTAGCAATACCACTGTCTTTTTCGGCTATTTCACATATGTATTACA
AATATACTGATGTAGACGATATTACATTTGAGTTCACAGATATACAGGAAGGTCCTGCAAGACGAAGAAAGATAATATAT
AGTGTTATTATTGCGTCAGCAGTTATTGCAGATTCATGCTATCTGTTAATGTCATTTAATAATAATCCTTTTGAAAATGT
TGCTATATTCCATGAAACTAAGGTTATGGCACACAGAGGAGCATCAAAAGAAGCGCCAGAGAATACTATGGCTGCCTTTG
AGAAAGCAATTGATGACATGGCGGATTACATTGAACTGGATGTACAGCTGACAGGAAGTGGAGAGGTAATTGTAATGCAT
GATTCAAATGCTTACAGAACTACCGGCATTGATGCAAATATAGTTGAAATGACTTATAGGGAAGTTAAAAGTCTTGATGC
CGGTTCGTGGTTTTCGGATGAGTATAAAGGCGAAAATGTTCCGCTGTTAAAAGAGGTACTTGAATTTACTCAGGGTAAGA
TTAAACTGAACATTGAGCTGAAACCTTCAGATAATGGTGAACTTCTTGCAAAGAATACAGTAAGACTTATAGAGAAATAT
AATATGGTTAATGATTGTGTTATAACATCTTTCAGTAATTCTGCATTGCAGGCAGTTAAATCATACAATGAAAATATTAA
GGTTGGATATATTTTATCAGCAGCATATGGAGATTTTTATGATATGAAGAATATAGATTTCTTTAGTATAAATGCTGCAT
TTTTATCAAAGAGAACTATAGATGCAATTCATAATTCAGGTAAGCGTGTTTATGCTTGGACAGTAAATAATAAAGAGTCA
ATCAAGAATCTGACTAACAAAGGCGTAGATGGGATCATTACTGACAATCCGGTGCTTGCAAGGGAGACAATATATTCGAG
AGATACATCGGAAACTATTGTTAACATGATAAGGTATGTGTTTAATCAGTAG

Upstream 100 bases:

>100_bases
AATATGCAGAATATGGATATCAGAGCGGAGATGAGAAAGTTTATTAAGATGTTTCACAGATAATCAGCATCTTATTGACA
ATTGATTCGGGGATAATTAT

Downstream 100 bases:

>100_bases
AATGGGGGCATATGTATGGAAAGAGGAATAGGAACTTCAAGAGGAATTGGCATAGGACATGTTCTTATTGTTTATAATGC
CAGTGCTGTTGTAAACAGGG

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 603; Mature: 603

Protein sequence:

>603_residues
MIFKKLRNNFSLLIDSSRHVWTFELAYKLVAFAVIFPIVLFAINFLMKIAGVNYLTNEYIQRAMTHPVVIFAIFLAVGIF
VFYCTYEMTYLSVCFETKRTSCNASVVDIFYNSYKVFKNVFKPRHVGLSIFYFISILASNVTVWFNVLYSETNTNLIKMY
IIRNHWYIKAEVIFVFVIIYAIVIPGIYAMNICMMEGLGFREAYKKSARMVKKHPMGTISALVVYNLVMLAIIGITYVLI
SVFLVAGVKILNMAYLGNAIFLSALRTERLIIKCILVCVAIPLSFSAISHMYYKYTDVDDITFEFTDIQEGPARRRKIIY
SVIIASAVIADSCYLLMSFNNNPFENVAIFHETKVMAHRGASKEAPENTMAAFEKAIDDMADYIELDVQLTGSGEVIVMH
DSNAYRTTGIDANIVEMTYREVKSLDAGSWFSDEYKGENVPLLKEVLEFTQGKIKLNIELKPSDNGELLAKNTVRLIEKY
NMVNDCVITSFSNSALQAVKSYNENIKVGYILSAAYGDFYDMKNIDFFSINAAFLSKRTIDAIHNSGKRVYAWTVNNKES
IKNLTNKGVDGIITDNPVLARETIYSRDTSETIVNMIRYVFNQ

Sequences:

>Translated_603_residues
MIFKKLRNNFSLLIDSSRHVWTFELAYKLVAFAVIFPIVLFAINFLMKIAGVNYLTNEYIQRAMTHPVVIFAIFLAVGIF
VFYCTYEMTYLSVCFETKRTSCNASVVDIFYNSYKVFKNVFKPRHVGLSIFYFISILASNVTVWFNVLYSETNTNLIKMY
IIRNHWYIKAEVIFVFVIIYAIVIPGIYAMNICMMEGLGFREAYKKSARMVKKHPMGTISALVVYNLVMLAIIGITYVLI
SVFLVAGVKILNMAYLGNAIFLSALRTERLIIKCILVCVAIPLSFSAISHMYYKYTDVDDITFEFTDIQEGPARRRKIIY
SVIIASAVIADSCYLLMSFNNNPFENVAIFHETKVMAHRGASKEAPENTMAAFEKAIDDMADYIELDVQLTGSGEVIVMH
DSNAYRTTGIDANIVEMTYREVKSLDAGSWFSDEYKGENVPLLKEVLEFTQGKIKLNIELKPSDNGELLAKNTVRLIEKY
NMVNDCVITSFSNSALQAVKSYNENIKVGYILSAAYGDFYDMKNIDFFSINAAFLSKRTIDAIHNSGKRVYAWTVNNKES
IKNLTNKGVDGIITDNPVLARETIYSRDTSETIVNMIRYVFNQ
>Mature_603_residues
MIFKKLRNNFSLLIDSSRHVWTFELAYKLVAFAVIFPIVLFAINFLMKIAGVNYLTNEYIQRAMTHPVVIFAIFLAVGIF
VFYCTYEMTYLSVCFETKRTSCNASVVDIFYNSYKVFKNVFKPRHVGLSIFYFISILASNVTVWFNVLYSETNTNLIKMY
IIRNHWYIKAEVIFVFVIIYAIVIPGIYAMNICMMEGLGFREAYKKSARMVKKHPMGTISALVVYNLVMLAIIGITYVLI
SVFLVAGVKILNMAYLGNAIFLSALRTERLIIKCILVCVAIPLSFSAISHMYYKYTDVDDITFEFTDIQEGPARRRKIIY
SVIIASAVIADSCYLLMSFNNNPFENVAIFHETKVMAHRGASKEAPENTMAAFEKAIDDMADYIELDVQLTGSGEVIVMH
DSNAYRTTGIDANIVEMTYREVKSLDAGSWFSDEYKGENVPLLKEVLEFTQGKIKLNIELKPSDNGELLAKNTVRLIEKY
NMVNDCVITSFSNSALQAVKSYNENIKVGYILSAAYGDFYDMKNIDFFSINAAFLSKRTIDAIHNSGKRVYAWTVNNKES
IKNLTNKGVDGIITDNPVLARETIYSRDTSETIVNMIRYVFNQ

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI260763876, Length=279, Percent_Identity=27.5985663082437, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI260763878, Length=169, Percent_Identity=33.7278106508876, Blast_Score=87, Evalue=6e-17,
Organism=Homo sapiens, GI260763880, Length=169, Percent_Identity=33.7278106508876, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI7706617, Length=95, Percent_Identity=33.6842105263158, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1789858, Length=229, Percent_Identity=31.0043668122271, Blast_Score=112, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17542344, Length=280, Percent_Identity=26.0714285714286, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17561436, Length=196, Percent_Identity=25.5102040816327, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 68633; Mature: 68633

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFKKLRNNFSLLIDSSRHVWTFELAYKLVAFAVIFPIVLFAINFLMKIAGVNYLTNEYI
CCHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
QRAMTHPVVIFAIFLAVGIFVFYCTYEMTYLSVCFETKRTSCNASVVDIFYNSYKVFKNV
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FKPRHVGLSIFYFISILASNVTVWFNVLYSETNTNLIKMYIIRNHWYIKAEVIFVFVIIY
CCCHHCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCEEEHHHHHHHHHHHH
AIVIPGIYAMNICMMEGLGFREAYKKSARMVKKHPMGTISALVVYNLVMLAIIGITYVLI
HHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVFLVAGVKILNMAYLGNAIFLSALRTERLIIKCILVCVAIPLSFSAISHMYYKYTDVDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
ITFEFTDIQEGPARRRKIIYSVIIASAVIADSCYLLMSFNNNPFENVAIFHETKVMAHRG
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEHHHHHHHCC
ASKEAPENTMAAFEKAIDDMADYIELDVQLTGSGEVIVMHDSNAYRTTGIDANIVEMTYR
CCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCCCEEECCCCCHHHHHHHH
EVKSLDAGSWFSDEYKGENVPLLKEVLEFTQGKIKLNIELKPSDNGELLAKNTVRLIEKY
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCEEHHHHHHHHHHH
NMVNDCVITSFSNSALQAVKSYNENIKVGYILSAAYGDFYDMKNIDFFSINAAFLSKRTI
CCHHHHHEECCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHH
DAIHNSGKRVYAWTVNNKESIKNLTNKGVDGIITDNPVLARETIYSRDTSETIVNMIRYV
HHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHH
FNQ
HCC
>Mature Secondary Structure
MIFKKLRNNFSLLIDSSRHVWTFELAYKLVAFAVIFPIVLFAINFLMKIAGVNYLTNEYI
CCHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
QRAMTHPVVIFAIFLAVGIFVFYCTYEMTYLSVCFETKRTSCNASVVDIFYNSYKVFKNV
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
FKPRHVGLSIFYFISILASNVTVWFNVLYSETNTNLIKMYIIRNHWYIKAEVIFVFVIIY
CCCHHCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEECCEEEHHHHHHHHHHHH
AIVIPGIYAMNICMMEGLGFREAYKKSARMVKKHPMGTISALVVYNLVMLAIIGITYVLI
HHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
SVFLVAGVKILNMAYLGNAIFLSALRTERLIIKCILVCVAIPLSFSAISHMYYKYTDVDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
ITFEFTDIQEGPARRRKIIYSVIIASAVIADSCYLLMSFNNNPFENVAIFHETKVMAHRG
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEEEHHHHHHHCC
ASKEAPENTMAAFEKAIDDMADYIELDVQLTGSGEVIVMHDSNAYRTTGIDANIVEMTYR
CCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCCCEEECCCCCHHHHHHHH
EVKSLDAGSWFSDEYKGENVPLLKEVLEFTQGKIKLNIELKPSDNGELLAKNTVRLIEKY
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCEEHHHHHHHHHHH
NMVNDCVITSFSNSALQAVKSYNENIKVGYILSAAYGDFYDMKNIDFFSINAAFLSKRTI
CCHHHHHEECCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHH
DAIHNSGKRVYAWTVNNKESIKNLTNKGVDGIITDNPVLARETIYSRDTSETIVNMIRYV
HHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEECCCCCCHHHHHHCCCHHHHHHHHHHHH
FNQ
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]