Click here to switch to the map view.

The map label for this gene is yfkH [H]

Identifier: 238917097

GI number: 238917097

Start: 1178983

End: 1179837

Strand: Direct

Name: yfkH [H]

Synonym: EUBELI_01167

Alternate gene names: 238917097

Gene position: 1178983-1179837 (Clockwise)

Preceding gene: 238917089

Following gene: 238917101

Centisome position: 54.99

GC content: 34.97

Gene sequence:

>855_bases
ATGCTCAATTTAATATTATTAATTAAAAGAATTGTCACTAAAATATCTGAAGACCGCATCGGCGACTACGCATCCTCAGC
ATGTTACTATCTTATGCTGAGCTTTTTCCCGTTCTTTATTGGTCTTTTAAGCCTTATAAAGTTTCTGCCAGTTTCCAAAG
CAGACCTTCTAAAGGTTATTTATGGCGTTCTTCCAACTCAGCTGCAGCCTATTGTCCAGGCAATGCTCACTGATATATAT
GACAATTCAACAACTGCATTAACCCTCATTACTGCAATTGCTATCATATGGGCTGCCGGTAAAGGTTTCATGGCTATAGT
CCGTGGATTAAAACAGATATACAGAAAAGATAACCAGAAGAACTGGCTTTTCCAGAGAATAAGAGCAAGTATCTATGCCC
TTATATTTATGATTCTTATTATTGCCAGCCTTATACTTATGGTATTTGGTAACAATATTATGAACTTCACTATGAAATAT
ATACCACAGCTTACTAATGTAGTCGTGATATTCAGAGGTATATTTAACAGTAAACATTTTCTCTTTCCAAGTATATTCAC
ACTCTTCTTTACTATAGCATTCTCACTTGTATCAAGAAGAGGAAAAAAGTTCTATAAAGAGATTCCAGGAGCTTTCTTTT
CTGCTTTAGGATGGTATCTTTTTACAGCACTGTATTCTCTTTATGTTGGCCACTCACCGAACTTTTCATACATGTACGGA
AGTCTTGCTACTATCATCATAGCACTTATATGGATGTATGCCTGTATGATTATAATATTCATCGGTGCAGAGATTAACTA
CTTCATCAATGATGAAAAAATATTCAGTCATTATCTTGGGAAGAAATCAGAGTAA

Upstream 100 bases:

>100_bases
CATTTTACATAAAATAACTGCTGTTTGCAAGTAATTGCTAAATTCTATAAAATAACATATAATATCTTGAAAACATTCAA
TTAAGGATTAAGGTATAAGA

Downstream 100 bases:

>100_bases
GCGTAGTACCTCTGTAGAAGAATTCCAGAATCTGCGCGTAAGTCATGGATTCTGCCATTTTATTGGCAGCATTCTGACTC
ATGCCAATTCCATGTCCGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MLNLILLIKRIVTKISEDRIGDYASSACYYLMLSFFPFFIGLLSLIKFLPVSKADLLKVIYGVLPTQLQPIVQAMLTDIY
DNSTTALTLITAIAIIWAAGKGFMAIVRGLKQIYRKDNQKNWLFQRIRASIYALIFMILIIASLILMVFGNNIMNFTMKY
IPQLTNVVVIFRGIFNSKHFLFPSIFTLFFTIAFSLVSRRGKKFYKEIPGAFFSALGWYLFTALYSLYVGHSPNFSYMYG
SLATIIIALIWMYACMIIIFIGAEINYFINDEKIFSHYLGKKSE

Sequences:

>Translated_284_residues
MLNLILLIKRIVTKISEDRIGDYASSACYYLMLSFFPFFIGLLSLIKFLPVSKADLLKVIYGVLPTQLQPIVQAMLTDIY
DNSTTALTLITAIAIIWAAGKGFMAIVRGLKQIYRKDNQKNWLFQRIRASIYALIFMILIIASLILMVFGNNIMNFTMKY
IPQLTNVVVIFRGIFNSKHFLFPSIFTLFFTIAFSLVSRRGKKFYKEIPGAFFSALGWYLFTALYSLYVGHSPNFSYMYG
SLATIIIALIWMYACMIIIFIGAEINYFINDEKIFSHYLGKKSE
>Mature_284_residues
MLNLILLIKRIVTKISEDRIGDYASSACYYLMLSFFPFFIGLLSLIKFLPVSKADLLKVIYGVLPTQLQPIVQAMLTDIY
DNSTTALTLITAIAIIWAAGKGFMAIVRGLKQIYRKDNQKNWLFQRIRASIYALIFMILIIASLILMVFGNNIMNFTMKY
IPQLTNVVVIFRGIFNSKHFLFPSIFTLFFTIAFSLVSRRGKKFYKEIPGAFFSALGWYLFTALYSLYVGHSPNFSYMYG
SLATIIIALIWMYACMIIIFIGAEINYFINDEKIFSHYLGKKSE

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32585; Mature: 32585

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHCHHHEEECHHHHHHHHCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHCHHHEEECHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]