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The map label for this gene is lytT [H]

Identifier: 238917074

GI number: 238917074

Start: 1157678

End: 1158397

Strand: Reverse

Name: lytT [H]

Synonym: EUBELI_01144

Alternate gene names: 238917074

Gene position: 1158397-1157678 (Counterclockwise)

Preceding gene: 238917075

Following gene: 238917073

Centisome position: 54.02

GC content: 30.0

Gene sequence:

>720_bases
ATGGGATATAATATAGCAATATGTGATGATGATAATTTAATGGCTCAGAATATTAAAAATTCAATGTTACATGAATTTAG
TAACAAAGGATGGCAGGATGTTACTATTGATTATTATGAAGATGGTGTCAGGCTGTTATCAAGCATTGAAGCGGATAATT
CATACAGGGTGGTTTTATTGGATATCAATATGGAGCCTATGGACGGATTTCAGATTGCAGAGCAGATAGCAAAAAGTAAT
TCGAAAATTCTTATAGTTTTTGTGACTTCACATGAAGAAACAGTATATGATTCTTTTGATTATATGCCTTTTTATTTTAT
CAGAAAGTCACGATATGAGATATCTGTAAAAAGAGTTGTTAATAAAATTATTGACAGGGAAAATCATGAAAAGAAAATAA
TGGTTGAAAGTAAGGATGGTCTGGTGGCTATAGATACAGCTAATATAATATATGCTGTAAGTCAGGATCATTATATTACA
ATATTCACAACCGATGATAATTATGTTATAAGAAAAAGTATGACAGAACTGGAAAATGAATTAAAGAATTATTTCATTAA
CCGTGCACACAAAAAGTATCTTGTTAATTATCGTTTTGTAAAAAAGATTAATAGTTCTACAGGTGAGGTGTTACTTGTTA
CAGGTGAGACTATCAGGCTTGGACGCAATTATAAAGATATATTTGAGAAAGGGTTAGTACTGTATTATCGTACATTATAA

Upstream 100 bases:

>100_bases
AGCCATCTAAGGAAGTTATGGATAAGTTTGAAGAAGTTAAGAATATGAGCAAATAATTCATGTCTCTTAATGTAATATGT
AGAAGAGAGTTTTATATAAT

Downstream 100 bases:

>100_bases
TCATGTTAAATATATATAATTCTATAACCATTCTGCAGTATTTTATACTTGTTATAATAGGTGTCATATTTTTAAAAAAA
GTATCAGAATTACTGGCTAA

Product: two-component system LytT family response regulator LytT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MGYNIAICDDDNLMAQNIKNSMLHEFSNKGWQDVTIDYYEDGVRLLSSIEADNSYRVVLLDINMEPMDGFQIAEQIAKSN
SKILIVFVTSHEETVYDSFDYMPFYFIRKSRYEISVKRVVNKIIDRENHEKKIMVESKDGLVAIDTANIIYAVSQDHYIT
IFTTDDNYVIRKSMTELENELKNYFINRAHKKYLVNYRFVKKINSSTGEVLLVTGETIRLGRNYKDIFEKGLVLYYRTL

Sequences:

>Translated_239_residues
MGYNIAICDDDNLMAQNIKNSMLHEFSNKGWQDVTIDYYEDGVRLLSSIEADNSYRVVLLDINMEPMDGFQIAEQIAKSN
SKILIVFVTSHEETVYDSFDYMPFYFIRKSRYEISVKRVVNKIIDRENHEKKIMVESKDGLVAIDTANIIYAVSQDHYIT
IFTTDDNYVIRKSMTELENELKNYFINRAHKKYLVNYRFVKKINSSTGEVLLVTGETIRLGRNYKDIFEKGLVLYYRTL
>Mature_238_residues
GYNIAICDDDNLMAQNIKNSMLHEFSNKGWQDVTIDYYEDGVRLLSSIEADNSYRVVLLDINMEPMDGFQIAEQIAKSNS
KILIVFVTSHEETVYDSFDYMPFYFIRKSRYEISVKRVVNKIIDRENHEKKIMVESKDGLVAIDTANIIYAVSQDHYITI
FTTDDNYVIRKSMTELENELKNYFINRAHKKYLVNYRFVKKINSSTGEVLLVTGETIRLGRNYKDIFEKGLVLYYRTL

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=213, Percent_Identity=23.4741784037559, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28021; Mature: 27890

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYNIAICDDDNLMAQNIKNSMLHEFSNKGWQDVTIDYYEDGVRLLSSIEADNSYRVVLL
CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEEE
DINMEPMDGFQIAEQIAKSNSKILIVFVTSHEETVYDSFDYMPFYFIRKSRYEISVKRVV
EECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEECCCCCCCEEEEEECCCCEEHHHHHH
NKIIDRENHEKKIMVESKDGLVAIDTANIIYAVSQDHYITIFTTDDNYVIRKSMTELENE
HHHHCCCCCCCEEEEECCCCEEEEECCEEEEEECCCCEEEEEECCCCEEEHHHHHHHHHH
LKNYFINRAHKKYLVNYRFVKKINSSTGEVLLVTGETIRLGRNYKDIFEKGLVLYYRTL
HHHHHHHHHHHHHHHHHHEEEHHCCCCCCEEEEECCEEEECCCHHHHHHCCEEEEEEEC
>Mature Secondary Structure 
GYNIAICDDDNLMAQNIKNSMLHEFSNKGWQDVTIDYYEDGVRLLSSIEADNSYRVVLL
CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCEEEEEE
DINMEPMDGFQIAEQIAKSNSKILIVFVTSHEETVYDSFDYMPFYFIRKSRYEISVKRVV
EECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEECCCCCCCEEEEEECCCCEEHHHHHH
NKIIDRENHEKKIMVESKDGLVAIDTANIIYAVSQDHYITIFTTDDNYVIRKSMTELENE
HHHHCCCCCCCEEEEECCCCEEEEECCEEEEEECCCCEEEEEECCCCEEEHHHHHHHHHH
LKNYFINRAHKKYLVNYRFVKKINSSTGEVLLVTGETIRLGRNYKDIFEKGLVLYYRTL
HHHHHHHHHHHHHHHHHHEEEHHCCCCCCEEEEECCEEEECCCHHHHHHCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]