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The map label for this gene is ygaD [C]

Identifier: 238917052

GI number: 238917052

Start: 1132820

End: 1133308

Strand: Reverse

Name: ygaD [C]

Synonym: EUBELI_01122

Alternate gene names: 238917052

Gene position: 1133308-1132820 (Counterclockwise)

Preceding gene: 238917053

Following gene: 238917051

Centisome position: 52.85

GC content: 41.1

Gene sequence:

>489_bases
ATGGTTGATTATCTCGGCTGTCTTGATAAGGCTCTTGTTGAGACATTAAAGAACAAATCCCTGACTATAACTACAGCTGA
GTCATGCACAGGCGGCATGGTTGCTTCGTCTATAGTTAATATAAGCGGTGCTTCAGACATTTTTAAAGAGGGCTATATTA
CATATAGTAATGAGGCGAAGGAACGTATTCTTGGAGTTAAGCATGAGACTCTTGAGAAGTATAAAGCTGTAAGTGCTGAA
ACTGCTGCCCAGATGGCAGAAGGAGCAGTAAGAATATCTAAGGCAGATATCAGTGTTTCTGTAACAGGTGTTGCAGGACC
TTCAAGAGAAGATGACAAGCCTGTTGGACTTGTGTATATTGGATGCTGCTATAAGGGTGAGACACATGTTAAAGAATGTG
ATTTGTCAGGCGACAGGCACACGATAAGGTGTCAGTCTACGAAGGAAGCACTTAAGTTTGTTCTTGATATAATTAAGACT
AACAGGTAG

Upstream 100 bases:

>100_bases
CTGTTCTCATATATATATCATTAGGATTGACAGTGATTTCTCTTATTGATTATATTGCAAAGAATTATAAAGTTTTTCTG
GAAGGTTCGGGTAAATAATA

Downstream 100 bases:

>100_bases
AGATTATTGTAATTATTAGTTTTATTATATTATTTACTATATTATTTGCTATGGCGTTGAAGACCTACTATTAAGCTTGA
AAGATGGCTTGAGTAGGTCT

Product: competence/damage-inducible protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MVDYLGCLDKALVETLKNKSLTITTAESCTGGMVASSIVNISGASDIFKEGYITYSNEAKERILGVKHETLEKYKAVSAE
TAAQMAEGAVRISKADISVSVTGVAGPSREDDKPVGLVYIGCCYKGETHVKECDLSGDRHTIRCQSTKEALKFVLDIIKT
NR

Sequences:

>Translated_162_residues
MVDYLGCLDKALVETLKNKSLTITTAESCTGGMVASSIVNISGASDIFKEGYITYSNEAKERILGVKHETLEKYKAVSAE
TAAQMAEGAVRISKADISVSVTGVAGPSREDDKPVGLVYIGCCYKGETHVKECDLSGDRHTIRCQSTKEALKFVLDIIKT
NR
>Mature_162_residues
MVDYLGCLDKALVETLKNKSLTITTAESCTGGMVASSIVNISGASDIFKEGYITYSNEAKERILGVKHETLEKYKAVSAE
TAAQMAEGAVRISKADISVSVTGVAGPSREDDKPVGLVYIGCCYKGETHVKECDLSGDRHTIRCQSTKEALKFVLDIIKT
NR

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=156, Percent_Identity=41.6666666666667, Blast_Score=126, Evalue=9e-31,
Organism=Escherichia coli, GI1787818, Length=141, Percent_Identity=37.5886524822695, Blast_Score=103, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 17457; Mature: 17457

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDYLGCLDKALVETLKNKSLTITTAESCTGGMVASSIVNISGASDIFKEGYITYSNEAK
CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCHHHHHCCCEEECCHHH
ERILGVKHETLEKYKAVSAETAAQMAEGAVRISKADISVSVTGVAGPSREDDKPVGLVYI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEECCCCCCCCCCCEEEEEE
GCCYKGETHVKECDLSGDRHTIRCQSTKEALKFVLDIIKTNR
EEEECCCCCCEECCCCCCCEEEEECCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVDYLGCLDKALVETLKNKSLTITTAESCTGGMVASSIVNISGASDIFKEGYITYSNEAK
CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCCHHHHHCCCEEECCHHH
ERILGVKHETLEKYKAVSAETAAQMAEGAVRISKADISVSVTGVAGPSREDDKPVGLVYI
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEECCCCCCCCCCCEEEEEE
GCCYKGETHVKECDLSGDRHTIRCQSTKEALKFVLDIIKTNR
EEEECCCCCCEECCCCCCCEEEEECCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA