Click here to switch to the map view.

The map label for this gene is rimM [H]

Identifier: 238916981

GI number: 238916981

Start: 1061349

End: 1061867

Strand: Reverse

Name: rimM [H]

Synonym: EUBELI_01050

Alternate gene names: 238916981

Gene position: 1061867-1061349 (Counterclockwise)

Preceding gene: 238916982

Following gene: 238916980

Centisome position: 49.52

GC content: 35.84

Gene sequence:

>519_bases
GTGGAAGATATGTTAAGAGTAGGGGTCATTACATCGACCCACGGAATCAGAGGTGAAGTTAAGGTCTTTCCTACAACAGA
TGATCCTCTTCGTTTTAAAAAACTTAAGAAATGTGTTATCGATGGAAAAAGAGAACAGGTAGCTGTCACTGTATCTTCAG
TTAAATTCTTTAAGCAGTTCGTAATACTTAAGTTTAAAGAGTTTGATGACATCAATGATATAGAGAAATACACAAAATGT
GACTTGCTCGTTTCAAGAGAAGATGCTGTTAAACTTGAGCCGGGAGAGTATTTTATATGCGATCTTATCGGACTTGATGT
TATAACAGATGAAGGAAAGCATTTGGGCGTACTAAAAGATGTATTAGAGACAGGCGCTAACAATGTATATGAAGTAGAGG
CAGATAATGGCGAAAGCTATTTAATACCGGTTATTGACCAGTGTATATTAGATCATGACCTTGATAAGAAGACTATAACA
GTCCATATCTTACCAGGGCTTCTGGATATTAATAAATAA

Upstream 100 bases:

>100_bases
TGAAATAGATAATTAAGCAAACACTACTGTCTAAGGCAGCCTTTCGGGGCTGTCTGTTTTGTTATTTATATATACATTTA
TGCCAGAATGGAGAATTTAA

Downstream 100 bases:

>100_bases
TAAAGAAAATGTATTTTTAGTCTTGCATTATTTGCTTGATTATGATAATCTAAACAAGTTGTGAGAAAAAGGGATGGTCC
TCTGTTACAGAACCTGTATT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MEDMLRVGVITSTHGIRGEVKVFPTTDDPLRFKKLKKCVIDGKREQVAVTVSSVKFFKQFVILKFKEFDDINDIEKYTKC
DLLVSREDAVKLEPGEYFICDLIGLDVITDEGKHLGVLKDVLETGANNVYEVEADNGESYLIPVIDQCILDHDLDKKTIT
VHILPGLLDINK

Sequences:

>Translated_172_residues
MEDMLRVGVITSTHGIRGEVKVFPTTDDPLRFKKLKKCVIDGKREQVAVTVSSVKFFKQFVILKFKEFDDINDIEKYTKC
DLLVSREDAVKLEPGEYFICDLIGLDVITDEGKHLGVLKDVLETGANNVYEVEADNGESYLIPVIDQCILDHDLDKKTIT
VHILPGLLDINK
>Mature_172_residues
MEDMLRVGVITSTHGIRGEVKVFPTTDDPLRFKKLKKCVIDGKREQVAVTVSSVKFFKQFVILKFKEFDDINDIEKYTKC
DLLVSREDAVKLEPGEYFICDLIGLDVITDEGKHLGVLKDVLETGANNVYEVEADNGESYLIPVIDQCILDHDLDKKTIT
VHILPGLLDINK

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=171, Percent_Identity=32.1637426900585, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19442; Mature: 19442

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDMLRVGVITSTHGIRGEVKVFPTTDDPLRFKKLKKCVIDGKREQVAVTVSSVKFFKQF
CCCCEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH
VILKFKEFDDINDIEKYTKCDLLVSREDAVKLEPGEYFICDLIGLDVITDEGKHLGVLKD
HHHHCCCCCCCHHHHHHHHHHEEEECCCCEEECCCCEEEEEEECCEEEECCCCCHHHHHH
VLETGANNVYEVEADNGESYLIPVIDQCILDHDLDKKTITVHILPGLLDINK
HHHHCCCCEEEEECCCCCEEEHHHHHHHHHCCCCCCEEEEEEEECCEEECCC
>Mature Secondary Structure
MEDMLRVGVITSTHGIRGEVKVFPTTDDPLRFKKLKKCVIDGKREQVAVTVSSVKFFKQF
CCCCEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHH
VILKFKEFDDINDIEKYTKCDLLVSREDAVKLEPGEYFICDLIGLDVITDEGKHLGVLKD
HHHHCCCCCCCHHHHHHHHHHEEEECCCCEEECCCCEEEEEEECCEEEECCCCCHHHHHH
VLETGANNVYEVEADNGESYLIPVIDQCILDHDLDKKTITVHILPGLLDINK
HHHHCCCCEEEEECCCCCEEEHHHHHHHHHCCCCCCEEEEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA