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The map label for this gene is recU [H]

Identifier: 238916957

GI number: 238916957

Start: 1039432

End: 1039905

Strand: Reverse

Name: recU [H]

Synonym: EUBELI_01026

Alternate gene names: 238916957

Gene position: 1039905-1039432 (Counterclockwise)

Preceding gene: 238916958

Following gene: 238916956

Centisome position: 48.5

GC content: 33.54

Gene sequence:

>474_bases
ATGTCTAATGATAAATACAGGACTTCACATCTTGCACTTGTCCAGAAGATTCCAACACCTATAAAGCCAATTAATATAGA
CCAGAGCACAAGACATATTACACTGGCATATTTTGACCAGAAAAGTACGGTTGACTATATTGGTGTCGTTCAGGGAATTC
CTGTATGTTTTGATGCAAAAGAATGTGCAACGGATACATTTCCAATTCAGAACATCCATGAACATCAGATTGAATTCATG
CGTGAATTTGAAAAACAGGACGGAATCTCCTTCATAATTATATATTTTTCTTCAAGAGATGAGTTCTATTATGTACCATT
TTCTGATATAATAAATTTTTGGAATAGAAGTGAAAATGGTGGTCGAAAAAGCTTCACATATAAAGAAATAAATCAGAATT
TCCGCATATATGCAAATCAGGGAATTCCTGTTCATTATCTGCAAACAATCCAGAAGGATATAGAATTACGATAG

Upstream 100 bases:

>100_bases
TAATACCTGATTCTTTTAAAAATGTCATGAAAGGAGAACAGTTATGCCGACCTGGAATTCAAGAGGACTTAGAGGCTCTA
CATTAGAAGACCTTATTAAT

Downstream 100 bases:

>100_bases
AAAGTAAGGTGAATAATATGAATCATGATAGTCATATTATGAGAAATAACCATATTGATGAATATGAATTAGTTAATGGA
TATGCTGTTGTTGACAATAA

Product: recombination protein U

Products: NA

Alternate protein names: Recombination protein U homolog [H]

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSNDKYRTSHLALVQKIPTPIKPINIDQSTRHITLAYFDQKSTVDYIGVVQGIPVCFDAKECATDTFPIQNIHEHQIEFM
REFEKQDGISFIIIYFSSRDEFYYVPFSDIINFWNRSENGGRKSFTYKEINQNFRIYANQGIPVHYLQTIQKDIELR

Sequences:

>Translated_157_residues
MSNDKYRTSHLALVQKIPTPIKPINIDQSTRHITLAYFDQKSTVDYIGVVQGIPVCFDAKECATDTFPIQNIHEHQIEFM
REFEKQDGISFIIIYFSSRDEFYYVPFSDIINFWNRSENGGRKSFTYKEINQNFRIYANQGIPVHYLQTIQKDIELR
>Mature_156_residues
SNDKYRTSHLALVQKIPTPIKPINIDQSTRHITLAYFDQKSTVDYIGVVQGIPVCFDAKECATDTFPIQNIHEHQIEFMR
EFEKQDGISFIIIYFSSRDEFYYVPFSDIINFWNRSENGGRKSFTYKEINQNFRIYANQGIPVHYLQTIQKDIELR

Specific function: Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair

COG id: COG3331

COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004612
- InterPro:   IPR011335 [H]

Pfam domain/function: PF03838 RecU [H]

EC number: NA

Molecular weight: Translated: 18540; Mature: 18409

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNDKYRTSHLALVQKIPTPIKPINIDQSTRHITLAYFDQKSTVDYIGVVQGIPVCFDAK
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCEEECCH
ECATDTFPIQNIHEHQIEFMREFEKQDGISFIIIYFSSRDEFYYVPFSDIINFWNRSENG
HHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECHHHHHHHHCCCCCC
GRKSFTYKEINQNFRIYANQGIPVHYLQTIQKDIELR
CCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNDKYRTSHLALVQKIPTPIKPINIDQSTRHITLAYFDQKSTVDYIGVVQGIPVCFDAK
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCEEECCH
ECATDTFPIQNIHEHQIEFMREFEKQDGISFIIIYFSSRDEFYYVPFSDIINFWNRSENG
HHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEECHHHHHHHHCCCCCC
GRKSFTYKEINQNFRIYANQGIPVHYLQTIQKDIELR
CCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA