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The map label for this gene is yjbJ [H]

Identifier: 238916879

GI number: 238916879

Start: 966034

End: 966969

Strand: Direct

Name: yjbJ [H]

Synonym: EUBELI_00948

Alternate gene names: 238916879

Gene position: 966034-966969 (Clockwise)

Preceding gene: 238916878

Following gene: 238916880

Centisome position: 45.05

GC content: 38.03

Gene sequence:

>936_bases
ATGAGTACAGTTAACAATATTAGTCCGATAGATGGCAGCGCATATCTTGTCAGTACAGGAAACAGCGTTAATGCCACATC
GGGAACTGATTTCGATAAAATATATAATGACATAGCCGTTGATGATTCGCTTGAAAGCATATTTGCAGGGGCAGCAAAAG
AGTTTGGAATTAATGAGAATTTTCTTAAAGCTGTTGCAAAGGCTGAATCAGGATTTGACCCGGATGCTGTATCAGGATGT
GGAGCGCAGGGGATTATGCAGCTTATGCCATTTACATCAGAAAGCTATGGGGTTACTGATCCGTTTGATGCAAAACAGAA
TATATATGCAGGGGCACAGCTGTTATCAGAACTTCTGGATAATTATAATGGTAATGCAACTCTTGCACTTGCTGCTTATA
ATGCAGGAAGCGGTTCTGTACAGAAATACGGAGGAGTGCCTCCATATGATGAAACTGTTAATTACATAAATAAAATTAAT
GATATATTAGGTGGATCTCTGGCAGGGGATTCAAAGACAATAGATGGTGCATCCACAACAGATTTTAGTGTTGCACAGAA
TGTCATTGCACCTGATATTGAAATTAAGAAAAGTACATTGGGTACATCAGCTGAGGCTGGTAAATTAATTGGGACAATTT
CTACTAATAATGATGACAGATTATCAGTAGGATTGTATAATGTAGTTACAGACAATGATTCGGATGTAATTAAGAATATG
GACGTGGGACGGAAATTACCTGATAATGATATGGCAGAAAATAGCACCGGTTATATATATTCAGGTAAAGAACTGTCATA
TGATGCTATGACAGCTAATGTGAATTTTCTCAATAATGCGTCATATGATTCTGTGTATAAGAATGATCCACAGTCCATAT
ATCAGGCACAGGCGTCTGTGATAAGCCCGCTTGTTCTTAAGCTTTTGGATTTGTAG

Upstream 100 bases:

>100_bases
AGCTAAAGCTGTATTTGATACTTATTTTGGCTATTGATATTCTGTCACACAGTATGTATAATTTTATTGATGAATTACTA
ATTTTTAAGAAGGAAATATA

Downstream 100 bases:

>100_bases
TCTTAACTAACAAGGAAAGAGGGGAAAATTATGAACAGTAACAGAATTAAAGTGACATTGTATAACAGAACATTTAAAGA
GATTGACCAGTCTGATTTTA

Product: glycoside hydrolase family 23-like lytic murein transglycosylase

Products: 1,6-Anhydrobond In The Muramic Acid Residue [C]

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSTVNNISPIDGSAYLVSTGNSVNATSGTDFDKIYNDIAVDDSLESIFAGAAKEFGINENFLKAVAKAESGFDPDAVSGC
GAQGIMQLMPFTSESYGVTDPFDAKQNIYAGAQLLSELLDNYNGNATLALAAYNAGSGSVQKYGGVPPYDETVNYINKIN
DILGGSLAGDSKTIDGASTTDFSVAQNVIAPDIEIKKSTLGTSAEAGKLIGTISTNNDDRLSVGLYNVVTDNDSDVIKNM
DVGRKLPDNDMAENSTGYIYSGKELSYDAMTANVNFLNNASYDSVYKNDPQSIYQAQASVISPLVLKLLDL

Sequences:

>Translated_311_residues
MSTVNNISPIDGSAYLVSTGNSVNATSGTDFDKIYNDIAVDDSLESIFAGAAKEFGINENFLKAVAKAESGFDPDAVSGC
GAQGIMQLMPFTSESYGVTDPFDAKQNIYAGAQLLSELLDNYNGNATLALAAYNAGSGSVQKYGGVPPYDETVNYINKIN
DILGGSLAGDSKTIDGASTTDFSVAQNVIAPDIEIKKSTLGTSAEAGKLIGTISTNNDDRLSVGLYNVVTDNDSDVIKNM
DVGRKLPDNDMAENSTGYIYSGKELSYDAMTANVNFLNNASYDSVYKNDPQSIYQAQASVISPLVLKLLDL
>Mature_310_residues
STVNNISPIDGSAYLVSTGNSVNATSGTDFDKIYNDIAVDDSLESIFAGAAKEFGINENFLKAVAKAESGFDPDAVSGCG
AQGIMQLMPFTSESYGVTDPFDAKQNIYAGAQLLSELLDNYNGNATLALAAYNAGSGSVQKYGGVPPYDETVNYINKIND
ILGGSLAGDSKTIDGASTTDFSVAQNVIAPDIEIKKSTLGTSAEAGKLIGTISTNNDDRLSVGLYNVVTDNDSDVIKNMD
VGRKLPDNDMAENSTGYIYSGKELSYDAMTANVNFLNNASYDSVYKNDPQSIYQAQASVISPLVLKLLDL

Specific function: Murein-Degrading Enzyme. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division (By Similarity). [C]

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 32808; Mature: 32677

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVNNISPIDGSAYLVSTGNSVNATSGTDFDKIYNDIAVDDSLESIFAGAAKEFGINEN
CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
FLKAVAKAESGFDPDAVSGCGAQGIMQLMPFTSESYGVTDPFDAKQNIYAGAQLLSELLD
HHHHHHHHHCCCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NYNGNATLALAAYNAGSGSVQKYGGVPPYDETVNYINKINDILGGSLAGDSKTIDGASTT
CCCCCEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
DFSVAQNVIAPDIEIKKSTLGTSAEAGKLIGTISTNNDDRLSVGLYNVVTDNDSDVIKNM
HHHHHHHHHCCCCEEEHHHCCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCHHHHHHC
DVGRKLPDNDMAENSTGYIYSGKELSYDAMTANVNFLNNASYDSVYKNDPQSIYQAQASV
CCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCHHCCCHHHHHHHHHHH
ISPLVLKLLDL
HHHHHHHHHCC
>Mature Secondary Structure 
STVNNISPIDGSAYLVSTGNSVNATSGTDFDKIYNDIAVDDSLESIFAGAAKEFGINEN
CCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCHH
FLKAVAKAESGFDPDAVSGCGAQGIMQLMPFTSESYGVTDPFDAKQNIYAGAQLLSELLD
HHHHHHHHHCCCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NYNGNATLALAAYNAGSGSVQKYGGVPPYDETVNYINKINDILGGSLAGDSKTIDGASTT
CCCCCEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
DFSVAQNVIAPDIEIKKSTLGTSAEAGKLIGTISTNNDDRLSVGLYNVVTDNDSDVIKNM
HHHHHHHHHCCCCEEEHHHCCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCHHHHHHC
DVGRKLPDNDMAENSTGYIYSGKELSYDAMTANVNFLNNASYDSVYKNDPQSIYQAQASV
CCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCHHCCCHHHHHHHHHHH
ISPLVLKLLDL
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]

Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]

General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]