| Definition | Eubacterium eligens ATCC 27750 chromosome, complete genome. |
|---|---|
| Accession | NC_012778 |
| Length | 2,144,190 |
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The map label for this gene is yrrO [H]
Identifier: 238916876
GI number: 238916876
Start: 960702
End: 963137
Strand: Direct
Name: yrrO [H]
Synonym: EUBELI_00945
Alternate gene names: 238916876
Gene position: 960702-963137 (Clockwise)
Preceding gene: 238916875
Following gene: 238916877
Centisome position: 44.8
GC content: 38.46
Gene sequence:
>2436_bases ATGCATTTGCAGCAGCCATTTAATTTAAAGGCGGTTACAACTATGAATGTTGATAAGAGAAAAACACAGGTGGAAGTTTT AGCACCAGCAGGTTCACTTGATATTATGAAAGCTGTTGTGGCGGCAGGGGCAGATGCCATATACCTGGGAGGCAATATGT TTGGAGCAAGGGCATTTGCCAATAATTTTAATGATGAAGAGCTTATCTGTGCTATTGAATATGCACATTTATTCGGTAGA AAGGTTTATCTGACAGTTAATACTCTTCTTAAGTCAAGAGAGATAGAGAACAGTCTTATAGAATATCTTATACCGTTCTA TGAGGCAGGTCTTGATGCAGTGATTGTACAGGATATGGGTGTGTTTAACCTTATAAGAAAACATTTTCCTGATATGGATA TACATGCAAGCACACAGATGACACAGACCGGAGTGTATGGCAGCAGGCTTTTAAAGGAACTTGGTGCAACAAGAATAGTC ACTTCAAGAGAGATGAATCTGCAGGAAATAAAGCAGCTTCATGAGAGATTAGATGTGGAGATAGAAAGCTTTGTGCATGG AGCATTATGTTACTGTTATTCGGGACAATGCCTGCTTTCAAGCTTTAACGGAGGAAGAAGCGGTAACAGGGGAAGGTGTG CCCAGCCGTGCAGGATGCCTTATGATGTGTATGATAACGGCGAAAAGATTAATAACAGAAACAACAGTTACGCATTAAGT CCTAAGGATATGTGTGCATTACAGATACTTCCGGATGTTATTGAAAGTGGTGTATATTCACTTAAGATAGAAGGACGTAT GAAGAATGTAACATATGCGGCTATGGTAACACATATTTACCGCAAATATGTTGATATGTATCTTGAAAAGGGGCGAAAAG GCTTCAGGGTAGATAAGCAGGATATTGATGACCTTTCAGATATATATAACAGAGGTGCATTTACATCAGGCTATTATGAC AGTGTCAAGGGAAAGAAGATGATGTCACTTGGACGTCCAAACCATATGGGAACGGAGTGCCTTAAGGTAGTATCTAACAA GGCAGGAAGAATTACATTTAAAGCATTAAAGAATGTAAACAAAGGTGATGTCTTTGAGATTGATAAGGAACATTCCTTTG AGAGCGGTGCTGATGTGGCAGCAGGACAGACATTCGTTGTCAATCTTCCTAAGAAATACCCGCTGTATGAGGGAAGAATT GTCAACAGAATGAATAATGCTAAGATTAAGGCATATGTAGCAGATAATTATGTCGGAACAACACCTAAGCTTCATGTAGA TATGAAGCTTATTGTAAGAAAGAATGAAAATATTTCACTTACAGTAATGTATGATGGAATTGAAAAGACATGTACAGGAG AGATAGTTACCGAAGCACAGAATCGTCCGGCCTCAGAGGAGGAGCTTGTTAAGAATCTTAAAAAAACCGGTGATACATGT TTTGTGGTGGAAGATGCAGAAGTGCAGCTTGATGATGGTATGTTTGTGCCTGTCGGCTGGATTAAGGAATTAAGAAGAAA TGTACTTGAACAGCTTGAAACACATTTAAAACACGGTCTTGTTAGAACTTATAATAAGCCTGAATGTGCAGAGACTGACG ACAAGAAAGAAGCTGATGATAATAATTATCAGGTAAGAAAAGCTGCATACCTTCATGATATAAAGCAGGTAAAGGAAGCA GCATCTGTTTCAGGTGTTGAAAGCATTTATCTTGATTATAAGATGTTTTATATGAATGATGAGAATTCATTAAAAGAGGC TGTAAAGCACTGTCAGTCACATGAAATATATGTATATATGTTCCTTCCACATATTCTTAAGGCAGAAAAATATGATAAGT TTAAGTGCTTGTGTGAGAAGGCTTCTGACTGTGGCATAGACAGGTTTGTATGCCGTAATATTGAGCAGATTGGTTTTCTT GGAAGTGACAATTGGAAGAAATTATCTGACAAGGTGCATATTATTACAGACAGCAGCATATATATATTTAATACATTTGC AAAAGATGAATTAAGAAGGCTGTGCAGTAATGCCGGGGTTATTCTTGACAGAATGACACTGCCACTTGAACTTACAGATA AGGAGATGAAGCCTGTAATTGGAAGTGACACGGAACTTGTTGTATATGGGGATGTGCCTCTTATGGTATCTGAACAGTGT GTGAGAAGAACTTACGGAAGATGTGACGGAAGCTGGGGCAGCATTAATATTACTGGACCAAAGGGCAGCAGTTATACAGT GGAAAGCATGTGTGAATTCTGCTATTCTGTAATGAATGGAGAAAAACTCAATCTTACAAAAGAAAATCCCGAAGAATCCA TGAATTGTGTGATTCGTTATGAATTTGACGAAAGAGCAGCAGATGATATACAATTAGTTATGACTGATGGAGTGTGTGGT GGTACTACAGGGCATTTTCATCAGGCAATCGACTAA
Upstream 100 bases:
>100_bases AAGTATCAGAAGAATATTGTCAAGTTAGAGACAGAACTGAATGATTCTAAGAAGTGATTTACATAAGATTATCTGATATT AATAATAAAGGCTGTTGCAA
Downstream 100 bases:
>100_bases GATTAAGTGACTTGAATAAAGGAGATTGCTATGCAGTCAGTTTTTATTGAACTTACAAAATACATATTTGCGTTTCTGAT GGCGTTTTATGTTCTTTCTG
Product: protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 811; Mature: 811
Protein sequence:
>811_residues MHLQQPFNLKAVTTMNVDKRKTQVEVLAPAGSLDIMKAVVAAGADAIYLGGNMFGARAFANNFNDEELICAIEYAHLFGR KVYLTVNTLLKSREIENSLIEYLIPFYEAGLDAVIVQDMGVFNLIRKHFPDMDIHASTQMTQTGVYGSRLLKELGATRIV TSREMNLQEIKQLHERLDVEIESFVHGALCYCYSGQCLLSSFNGGRSGNRGRCAQPCRMPYDVYDNGEKINNRNNSYALS PKDMCALQILPDVIESGVYSLKIEGRMKNVTYAAMVTHIYRKYVDMYLEKGRKGFRVDKQDIDDLSDIYNRGAFTSGYYD SVKGKKMMSLGRPNHMGTECLKVVSNKAGRITFKALKNVNKGDVFEIDKEHSFESGADVAAGQTFVVNLPKKYPLYEGRI VNRMNNAKIKAYVADNYVGTTPKLHVDMKLIVRKNENISLTVMYDGIEKTCTGEIVTEAQNRPASEEELVKNLKKTGDTC FVVEDAEVQLDDGMFVPVGWIKELRRNVLEQLETHLKHGLVRTYNKPECAETDDKKEADDNNYQVRKAAYLHDIKQVKEA ASVSGVESIYLDYKMFYMNDENSLKEAVKHCQSHEIYVYMFLPHILKAEKYDKFKCLCEKASDCGIDRFVCRNIEQIGFL GSDNWKKLSDKVHIITDSSIYIFNTFAKDELRRLCSNAGVILDRMTLPLELTDKEMKPVIGSDTELVVYGDVPLMVSEQC VRRTYGRCDGSWGSINITGPKGSSYTVESMCEFCYSVMNGEKLNLTKENPEESMNCVIRYEFDERAADDIQLVMTDGVCG GTTGHFHQAID
Sequences:
>Translated_811_residues MHLQQPFNLKAVTTMNVDKRKTQVEVLAPAGSLDIMKAVVAAGADAIYLGGNMFGARAFANNFNDEELICAIEYAHLFGR KVYLTVNTLLKSREIENSLIEYLIPFYEAGLDAVIVQDMGVFNLIRKHFPDMDIHASTQMTQTGVYGSRLLKELGATRIV TSREMNLQEIKQLHERLDVEIESFVHGALCYCYSGQCLLSSFNGGRSGNRGRCAQPCRMPYDVYDNGEKINNRNNSYALS PKDMCALQILPDVIESGVYSLKIEGRMKNVTYAAMVTHIYRKYVDMYLEKGRKGFRVDKQDIDDLSDIYNRGAFTSGYYD SVKGKKMMSLGRPNHMGTECLKVVSNKAGRITFKALKNVNKGDVFEIDKEHSFESGADVAAGQTFVVNLPKKYPLYEGRI VNRMNNAKIKAYVADNYVGTTPKLHVDMKLIVRKNENISLTVMYDGIEKTCTGEIVTEAQNRPASEEELVKNLKKTGDTC FVVEDAEVQLDDGMFVPVGWIKELRRNVLEQLETHLKHGLVRTYNKPECAETDDKKEADDNNYQVRKAAYLHDIKQVKEA ASVSGVESIYLDYKMFYMNDENSLKEAVKHCQSHEIYVYMFLPHILKAEKYDKFKCLCEKASDCGIDRFVCRNIEQIGFL GSDNWKKLSDKVHIITDSSIYIFNTFAKDELRRLCSNAGVILDRMTLPLELTDKEMKPVIGSDTELVVYGDVPLMVSEQC VRRTYGRCDGSWGSINITGPKGSSYTVESMCEFCYSVMNGEKLNLTKENPEESMNCVIRYEFDERAADDIQLVMTDGVCG GTTGHFHQAID >Mature_811_residues MHLQQPFNLKAVTTMNVDKRKTQVEVLAPAGSLDIMKAVVAAGADAIYLGGNMFGARAFANNFNDEELICAIEYAHLFGR KVYLTVNTLLKSREIENSLIEYLIPFYEAGLDAVIVQDMGVFNLIRKHFPDMDIHASTQMTQTGVYGSRLLKELGATRIV TSREMNLQEIKQLHERLDVEIESFVHGALCYCYSGQCLLSSFNGGRSGNRGRCAQPCRMPYDVYDNGEKINNRNNSYALS PKDMCALQILPDVIESGVYSLKIEGRMKNVTYAAMVTHIYRKYVDMYLEKGRKGFRVDKQDIDDLSDIYNRGAFTSGYYD SVKGKKMMSLGRPNHMGTECLKVVSNKAGRITFKALKNVNKGDVFEIDKEHSFESGADVAAGQTFVVNLPKKYPLYEGRI VNRMNNAKIKAYVADNYVGTTPKLHVDMKLIVRKNENISLTVMYDGIEKTCTGEIVTEAQNRPASEEELVKNLKKTGDTC FVVEDAEVQLDDGMFVPVGWIKELRRNVLEQLETHLKHGLVRTYNKPECAETDDKKEADDNNYQVRKAAYLHDIKQVKEA ASVSGVESIYLDYKMFYMNDENSLKEAVKHCQSHEIYVYMFLPHILKAEKYDKFKCLCEKASDCGIDRFVCRNIEQIGFL GSDNWKKLSDKVHIITDSSIYIFNTFAKDELRRLCSNAGVILDRMTLPLELTDKEMKPVIGSDTELVVYGDVPLMVSEQC VRRTYGRCDGSWGSINITGPKGSSYTVESMCEFCYSVMNGEKLNLTKENPEESMNCVIRYEFDERAADDIQLVMTDGVCG GTTGHFHQAID
Specific function: Unknown
COG id: COG0826
COG function: function code O; Collagenase and related proteases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U32 family [H]
Homologues:
Organism=Escherichia coli, GI87081910, Length=519, Percent_Identity=29.8651252408478, Blast_Score=220, Evalue=2e-58, Organism=Escherichia coli, GI1788397, Length=340, Percent_Identity=32.6470588235294, Blast_Score=171, Evalue=2e-43, Organism=Escherichia coli, GI1789548, Length=301, Percent_Identity=26.9102990033223, Blast_Score=116, Evalue=6e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001539 [H]
Pfam domain/function: PF01136 Peptidase_U32 [H]
EC number: 3.4.-.- [C]
Molecular weight: Translated: 91653; Mature: 91653
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS01276 PEPTIDASE_U32
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLQQPFNLKAVTTMNVDKRKTQVEVLAPAGSLDIMKAVVAAGADAIYLGGNMFGARAFA CCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHH NNFNDEELICAIEYAHLFGRKVYLTVNTLLKSREIENSLIEYLIPFYEAGLDAVIVQDMG CCCCCCCEEEEEEHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCC VFNLIRKHFPDMDIHASTQMTQTGVYGSRLLKELGATRIVTSREMNLQEIKQLHERLDVE HHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCC IESFVHGALCYCYSGQCLLSSFNGGRSGNRGRCAQPCRMPYDVYDNGEKINNRNNSYALS HHHHHHHHEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC PKDMCALQILPDVIESGVYSLKIEGRMKNVTYAAMVTHIYRKYVDMYLEKGRKGFRVDKQ HHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH DIDDLSDIYNRGAFTSGYYDSVKGKKMMSLGRPNHMGTECLKVVSNKAGRITFKALKNVN HHHHHHHHHHCCCCCCCCHHCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEEEHHHHCCCC KGDVFEIDKEHSFESGADVAAGQTFVVNLPKKYPLYEGRIVNRMNNAKIKAYVADNYVGT CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCEEEEEEECCCCCC TPKLHVDMKLIVRKNENISLTVMYDGIEKTCTGEIVTEAQNRPASEEELVKNLKKTGDTC CCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCEE FVVEDAEVQLDDGMFVPVGWIKELRRNVLEQLETHLKHGLVRTYNKPECAETDDKKEADD EEEECCEEEECCCEEECHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCC NNYQVRKAAYLHDIKQVKEAASVSGVESIYLDYKMFYMNDENSLKEAVKHCQSHEIYVYM CCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCCEEEEE FLPHILKAEKYDKFKCLCEKASDCGIDRFVCRNIEQIGFLGSDNWKKLSDKVHIITDSSI ECHHHHHHCCCHHHHHHHHHHCCCCCHHHHHCCHHHHCCCCCCCHHHCCCEEEEEECCCE YIFNTFAKDELRRLCSNAGVILDRMTLPLELTDKEMKPVIGSDTELVVYGDVPLMVSEQC EEEECCCHHHHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCCCCEEEECCCCHHHHHHH VRRTYGRCDGSWGSINITGPKGSSYTVESMCEFCYSVMNGEKLNLTKENPEESMNCVIRY HHHHHHCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEE EFDERAADDIQLVMTDGVCGGTTGHFHQAID ECCCCCCCCEEEEEECCCCCCCCCCHHHCCC >Mature Secondary Structure MHLQQPFNLKAVTTMNVDKRKTQVEVLAPAGSLDIMKAVVAAGADAIYLGGNMFGARAFA CCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHH NNFNDEELICAIEYAHLFGRKVYLTVNTLLKSREIENSLIEYLIPFYEAGLDAVIVQDMG CCCCCCCEEEEEEHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCC VFNLIRKHFPDMDIHASTQMTQTGVYGSRLLKELGATRIVTSREMNLQEIKQLHERLDVE HHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCC IESFVHGALCYCYSGQCLLSSFNGGRSGNRGRCAQPCRMPYDVYDNGEKINNRNNSYALS HHHHHHHHEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC PKDMCALQILPDVIESGVYSLKIEGRMKNVTYAAMVTHIYRKYVDMYLEKGRKGFRVDKQ HHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH DIDDLSDIYNRGAFTSGYYDSVKGKKMMSLGRPNHMGTECLKVVSNKAGRITFKALKNVN HHHHHHHHHHCCCCCCCCHHCCCCCHHHHCCCCCCCHHHHHHHHHCCCCEEEHHHHCCCC KGDVFEIDKEHSFESGADVAAGQTFVVNLPKKYPLYEGRIVNRMNNAKIKAYVADNYVGT CCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCEEEEEEECCCCCC TPKLHVDMKLIVRKNENISLTVMYDGIEKTCTGEIVTEAQNRPASEEELVKNLKKTGDTC CCEEEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCEE FVVEDAEVQLDDGMFVPVGWIKELRRNVLEQLETHLKHGLVRTYNKPECAETDDKKEADD EEEECCEEEECCCEEECHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCC NNYQVRKAAYLHDIKQVKEAASVSGVESIYLDYKMFYMNDENSLKEAVKHCQSHEIYVYM CCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCCEEEEE FLPHILKAEKYDKFKCLCEKASDCGIDRFVCRNIEQIGFLGSDNWKKLSDKVHIITDSSI ECHHHHHHCCCHHHHHHHHHHCCCCCHHHHHCCHHHHCCCCCCCHHHCCCEEEEEECCCE YIFNTFAKDELRRLCSNAGVILDRMTLPLELTDKEMKPVIGSDTELVVYGDVPLMVSEQC EEEECCCHHHHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCCCCEEEECCCCHHHHHHH VRRTYGRCDGSWGSINITGPKGSSYTVESMCEFCYSVMNGEKLNLTKENPEESMNCVIRY HHHHHHCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEE EFDERAADDIQLVMTDGVCGGTTGHFHQAID ECCCCCCCCEEEEEECCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]