Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 238916740

GI number: 238916740

Start: 818762

End: 819901

Strand: Direct

Name: smf [H]

Synonym: EUBELI_00802

Alternate gene names: 238916740

Gene position: 818762-819901 (Clockwise)

Preceding gene: 238916739

Following gene: 238916741

Centisome position: 38.19

GC content: 37.37

Gene sequence:

>1140_bases
TTGAAAGAAGATTATTATTGGTATTGGGTTAATAATATTGCTGGAATATCTAATATGAAACTGAGAACATTATTTAATGC
ATTTGATACACCAGAACAGATATATAAGGCGTCAGATAAATTGCTTAACAGTGTGTCAGGAATAAAAGAAAAAGATGTGT
CAGCAATTATAGAGTCCAGAAATAATGAATATATATACAGAGGTTATAATGATTTAGAAAGAATGAAAATTAAATTCACA
TATCCCGGAAAGAATGATTATCCTGAGCAATTAATGAATATATATGATTATCCATATATTCTTTATTATAAAGGGAGACT
GCCTCAAGCGAATGTTCCTGCTATAGCTATAGTAGGTGCACGTAATTGTACAGAGTATGGGAGGACAATTGCAGATATGC
TGGCAAAATGTTTTGCAGATATGGGAATTCAGGTTATCAGTGGGATGGCATTAGGAATAGATGCAGCGGCACAGAGAGGA
GCTGTTAATAAAGGCGGATACAGTCTTGCGGTTCTTGGATGTGGAGTGGATGTGTGTTATCCAAGAAGTAATATAGATTT
ATATACACAATTGCAGAATGCAGGTGGGATAATGTCTGAATATCCGCCGGGTACGCCGCCAAGAGCCGGGCAGTTTCCGA
TGAGGAACAGAATTATAAGTGGCATTGCAGATGCGTTAATTGTGGTTGAGGCAAGACAGAAGAGTGGCTCTCTTATAACT
GCGGATCAGGCATTGGAGCAGAACAGGGATGTTTATGTTGTCCCGGGAAGAATAGGTGATTCGTTATCAGAAGGATGTCT
GAAACTTATAAAGGAAGGTGCGCAGATGATTACATCACCGATGGATGTATGTGCTACGGAGAGTATTAACAGATATCTTA
ATAAAAACATAAAACAATGTGATTTCCCGAATGATTTGAATGATGCTGGTATATTTGAAGGCAATTTAAAAAAATCAGGG
CTTGCAAGCCCTAAAAATATGGTGTATAGTCAAATCAATTTGTTTCCGGTAAGTCTGGAGACAATTGTTAATAATTCTAG
GATAAGTCTGGTAGAGGCGGAGGGGATTCTGCTTGAGCTGGAGCTTGATGGGCTTATTGAAGAGGTTTCAAAGAATTATT
ATATAAGGAAGCATATTTGA

Upstream 100 bases:

>100_bases
TTGCAGACATAGAAGGCAATGAATATATTACTACTTCTAATATTAGTGAAGCATTTTATTATAGGGGAATTCCAGAAATA
ACAGTACACTAGGGGGAACA

Downstream 100 bases:

>100_bases
TTTGGAGGGCTATAGATGCATAAGTATTTGGTTATAGTGGAGTCACCTGCCAAGGTAAAGACTATCAGTAAATTCCTTGG
AGCTAATTACAAGGTAATGG

Product: DNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKEDYYWYWVNNIAGISNMKLRTLFNAFDTPEQIYKASDKLLNSVSGIKEKDVSAIIESRNNEYIYRGYNDLERMKIKFT
YPGKNDYPEQLMNIYDYPYILYYKGRLPQANVPAIAIVGARNCTEYGRTIADMLAKCFADMGIQVISGMALGIDAAAQRG
AVNKGGYSLAVLGCGVDVCYPRSNIDLYTQLQNAGGIMSEYPPGTPPRAGQFPMRNRIISGIADALIVVEARQKSGSLIT
ADQALEQNRDVYVVPGRIGDSLSEGCLKLIKEGAQMITSPMDVCATESINRYLNKNIKQCDFPNDLNDAGIFEGNLKKSG
LASPKNMVYSQINLFPVSLETIVNNSRISLVEAEGILLELELDGLIEEVSKNYYIRKHI

Sequences:

>Translated_379_residues
MKEDYYWYWVNNIAGISNMKLRTLFNAFDTPEQIYKASDKLLNSVSGIKEKDVSAIIESRNNEYIYRGYNDLERMKIKFT
YPGKNDYPEQLMNIYDYPYILYYKGRLPQANVPAIAIVGARNCTEYGRTIADMLAKCFADMGIQVISGMALGIDAAAQRG
AVNKGGYSLAVLGCGVDVCYPRSNIDLYTQLQNAGGIMSEYPPGTPPRAGQFPMRNRIISGIADALIVVEARQKSGSLIT
ADQALEQNRDVYVVPGRIGDSLSEGCLKLIKEGAQMITSPMDVCATESINRYLNKNIKQCDFPNDLNDAGIFEGNLKKSG
LASPKNMVYSQINLFPVSLETIVNNSRISLVEAEGILLELELDGLIEEVSKNYYIRKHI
>Mature_379_residues
MKEDYYWYWVNNIAGISNMKLRTLFNAFDTPEQIYKASDKLLNSVSGIKEKDVSAIIESRNNEYIYRGYNDLERMKIKFT
YPGKNDYPEQLMNIYDYPYILYYKGRLPQANVPAIAIVGARNCTEYGRTIADMLAKCFADMGIQVISGMALGIDAAAQRG
AVNKGGYSLAVLGCGVDVCYPRSNIDLYTQLQNAGGIMSEYPPGTPPRAGQFPMRNRIISGIADALIVVEARQKSGSLIT
ADQALEQNRDVYVVPGRIGDSLSEGCLKLIKEGAQMITSPMDVCATESINRYLNKNIKQCDFPNDLNDAGIFEGNLKKSG
LASPKNMVYSQINLFPVSLETIVNNSRISLVEAEGILLELELDGLIEEVSKNYYIRKHI

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=288, Percent_Identity=34.7222222222222, Blast_Score=165, Evalue=6e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488
- InterPro:   IPR010994 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 42198; Mature: 42198

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEDYYWYWVNNIAGISNMKLRTLFNAFDTPEQIYKASDKLLNSVSGIKEKDVSAIIESR
CCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
NNEYIYRGYNDLERMKIKFTYPGKNDYPEQLMNIYDYPYILYYKGRLPQANVPAIAIVGA
CCCEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEC
RNCTEYGRTIADMLAKCFADMGIQVISGMALGIDAAAQRGAVNKGGYSLAVLGCGVDVCY
CCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHCHHHHHHCCCCCCCCCEEEEEECCCEEEC
PRSNIDLYTQLQNAGGIMSEYPPGTPPRAGQFPMRNRIISGIADALIVVEARQKSGSLIT
CCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCEEE
ADQALEQNRDVYVVPGRIGDSLSEGCLKLIKEGAQMITSPMDVCATESINRYLNKNIKQC
HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
DFPNDLNDAGIFEGNLKKSGLASPKNMVYSQINLFPVSLETIVNNSRISLVEAEGILLEL
CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHEEEEEEHHHHHCCCEEEEEEECCEEEEE
ELDGLIEEVSKNYYIRKHI
EHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MKEDYYWYWVNNIAGISNMKLRTLFNAFDTPEQIYKASDKLLNSVSGIKEKDVSAIIESR
CCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
NNEYIYRGYNDLERMKIKFTYPGKNDYPEQLMNIYDYPYILYYKGRLPQANVPAIAIVGA
CCCEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEC
RNCTEYGRTIADMLAKCFADMGIQVISGMALGIDAAAQRGAVNKGGYSLAVLGCGVDVCY
CCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHCHHHHHHCCCCCCCCCEEEEEECCCEEEC
PRSNIDLYTQLQNAGGIMSEYPPGTPPRAGQFPMRNRIISGIADALIVVEARQKSGSLIT
CCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCEEE
ADQALEQNRDVYVVPGRIGDSLSEGCLKLIKEGAQMITSPMDVCATESINRYLNKNIKQC
HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
DFPNDLNDAGIFEGNLKKSGLASPKNMVYSQINLFPVSLETIVNNSRISLVEAEGILLEL
CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHEEEEEEHHHHHCCCEEEEEEECCEEEEE
ELDGLIEEVSKNYYIRKHI
EHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]