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The map label for this gene is rsmB [H]

Identifier: 238916656

GI number: 238916656

Start: 720952

End: 722256

Strand: Direct

Name: rsmB [H]

Synonym: EUBELI_00718

Alternate gene names: 238916656

Gene position: 720952-722256 (Clockwise)

Preceding gene: 238916655

Following gene: 238916657

Centisome position: 33.62

GC content: 38.31

Gene sequence:

>1305_bases
GTGACTGATTCGGTGAATTTAAGGGCAGTTGTACTGGATATACTTATGGAAATCAATGAGAAGGGTGAATTTTCACACCT
TCTCATTAATAATGCACTGACAAAATACCAGTATCTTGATAAGAATAAGAGAGCATTTATAAGCAGGTTGTCTCTCGGAA
CTATTGAGAACAGGATTGAACTTGACTATATAATTGACCAGTATTCAAAGACTCCTGTAAGAAAGATGAAACCACTTATA
AGAAATATATGTGAAATGTCTGTATACCAGATAATATATATGGATAATATCCCTGATTCGGCAGTGTGCAATGAGGCTGT
GAAGCTGGCTACAAAACGTGGATTCACAGGGCTTAAGGGGTTTGTGAACGGAGTCTTAAGAAACATTGCAAGAAATAAAG
ACAATATTTCATATCCTGACAGAAATAAGGATATTGAACAGTACCTTTCTGTAAAATACTCAATGCCATTATGGATAGTT
AAAATGTGGCACAGTCAGCTTGGAATTGATATGACTGAGGAAATTCTAGCAGGCTTTAAGCAGGAGAAAAAGACTTATAT
AAGATGTAATACGGCAAAGGCTACGGTTGAAGAAATAAAGAAGATTCTTTCACAGGAAAGCGTATCTGTAGCAGAAGTTG
AAGGTATACAATATGCTTTAGAGATTAAGGACTATGATTATATAGCCGGACTTAAGAGTTTCAGGGATGGTCTGTACCAG
ATACAGGATATAAGCTCTATGACAGCAGGATATATGACAGGATTCAAGGCTGGTGACACAGTAATTGATGTGTGTGCGGC
ACCGGGAGGAAAGAGCATTAATGCGGCGATAAGCGTTGGTGCTGATGGTAAGGTATATTCAAGGGATGTATCAGACTATA
AGGCAGGGCTTATTGAAGAAAATGTATTAAGGCTCGGACTTAATAATATAGAAGTCCAGGTAAAAGATGCACTCGTAATG
GATGAATCTATGAGAGAGAAGGCAGATGTTGTTATAGCAGACCTTCCATGCTCAGGACTTGGCGTTATGGGAAGAAAGCC
TGATATCAGATATAATATAACAGAGGACAAGCTTGTTTCATTAAAAGAGCTGCAGCAGAGCATACTTTCTGTAGTACAGG
CATATGTTAAGCAGGGCGGTATAATGATGTACAGTACATGTACAATTAATTCAGAAGAGAATGAAGCCAATGCTGACTGG
TTATGTAAAGAATATGGCTTTAAGAAGATAGAATACAGACAGATTCTGCCGGGAAAGAATGGCGGAACAGATGGGTTCTT
TGTCGCAAAACTTAGGAGAGAATAG

Upstream 100 bases:

>100_bases
AAAAAGGTGCTTTCAGCAGCAGCCATGACATATGTTGCGGCAGCAGCCACAGCAATTTTACAGCTTTTAAGACTGATTTA
TTTATTTGGAGGAAGACGCC

Downstream 100 bases:

>100_bases
ACATGACAGATATTAAGTCACTTAATTATGACGAACTTGTAACATATATGGCCGGACTTGGTGAGAAGAAGTTCAGGGCT
GGGCAGCTATATCAGTGGAT

Product: Sun protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MTDSVNLRAVVLDILMEINEKGEFSHLLINNALTKYQYLDKNKRAFISRLSLGTIENRIELDYIIDQYSKTPVRKMKPLI
RNICEMSVYQIIYMDNIPDSAVCNEAVKLATKRGFTGLKGFVNGVLRNIARNKDNISYPDRNKDIEQYLSVKYSMPLWIV
KMWHSQLGIDMTEEILAGFKQEKKTYIRCNTAKATVEEIKKILSQESVSVAEVEGIQYALEIKDYDYIAGLKSFRDGLYQ
IQDISSMTAGYMTGFKAGDTVIDVCAAPGGKSINAAISVGADGKVYSRDVSDYKAGLIEENVLRLGLNNIEVQVKDALVM
DESMREKADVVIADLPCSGLGVMGRKPDIRYNITEDKLVSLKELQQSILSVVQAYVKQGGIMMYSTCTINSEENEANADW
LCKEYGFKKIEYRQILPGKNGGTDGFFVAKLRRE

Sequences:

>Translated_434_residues
MTDSVNLRAVVLDILMEINEKGEFSHLLINNALTKYQYLDKNKRAFISRLSLGTIENRIELDYIIDQYSKTPVRKMKPLI
RNICEMSVYQIIYMDNIPDSAVCNEAVKLATKRGFTGLKGFVNGVLRNIARNKDNISYPDRNKDIEQYLSVKYSMPLWIV
KMWHSQLGIDMTEEILAGFKQEKKTYIRCNTAKATVEEIKKILSQESVSVAEVEGIQYALEIKDYDYIAGLKSFRDGLYQ
IQDISSMTAGYMTGFKAGDTVIDVCAAPGGKSINAAISVGADGKVYSRDVSDYKAGLIEENVLRLGLNNIEVQVKDALVM
DESMREKADVVIADLPCSGLGVMGRKPDIRYNITEDKLVSLKELQQSILSVVQAYVKQGGIMMYSTCTINSEENEANADW
LCKEYGFKKIEYRQILPGKNGGTDGFFVAKLRRE
>Mature_433_residues
TDSVNLRAVVLDILMEINEKGEFSHLLINNALTKYQYLDKNKRAFISRLSLGTIENRIELDYIIDQYSKTPVRKMKPLIR
NICEMSVYQIIYMDNIPDSAVCNEAVKLATKRGFTGLKGFVNGVLRNIARNKDNISYPDRNKDIEQYLSVKYSMPLWIVK
MWHSQLGIDMTEEILAGFKQEKKTYIRCNTAKATVEEIKKILSQESVSVAEVEGIQYALEIKDYDYIAGLKSFRDGLYQI
QDISSMTAGYMTGFKAGDTVIDVCAAPGGKSINAAISVGADGKVYSRDVSDYKAGLIEENVLRLGLNNIEVQVKDALVMD
ESMREKADVVIADLPCSGLGVMGRKPDIRYNITEDKLVSLKELQQSILSVVQAYVKQGGIMMYSTCTINSEENEANADWL
CKEYGFKKIEYRQILPGKNGGTDGFFVAKLRRE

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=193, Percent_Identity=28.4974093264249, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI76150625, Length=267, Percent_Identity=27.3408239700375, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI76150623, Length=267, Percent_Identity=27.3408239700375, Blast_Score=87, Evalue=3e-17,
Organism=Escherichia coli, GI2367212, Length=443, Percent_Identity=25.9593679458239, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI87081985, Length=284, Percent_Identity=26.4084507042254, Blast_Score=117, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17536757, Length=260, Percent_Identity=25.7692307692308, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115534021, Length=164, Percent_Identity=30.4878048780488, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71998419, Length=225, Percent_Identity=28, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324268, Length=277, Percent_Identity=25.9927797833935, Blast_Score=86, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6319447, Length=170, Percent_Identity=28.2352941176471, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI22024126, Length=224, Percent_Identity=28.125, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24668781, Length=242, Percent_Identity=26.8595041322314, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21356513, Length=242, Percent_Identity=26.8595041322314, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21355201, Length=297, Percent_Identity=23.9057239057239, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 48859; Mature: 48728

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSVNLRAVVLDILMEINEKGEFSHLLINNALTKYQYLDKNKRAFISRLSLGTIENRIE
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEE
LDYIIDQYSKTPVRKMKPLIRNICEMSVYQIIYMDNIPDSAVCNEAVKLATKRGFTGLKG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHH
FVNGVLRNIARNKDNISYPDRNKDIEQYLSVKYSMPLWIVKMWHSQLGIDMTEEILAGFK
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
QEKKTYIRCNTAKATVEEIKKILSQESVSVAEVEGIQYALEIKDYDYIAGLKSFRDGLYQ
HCCCEEEEECCHHHHHHHHHHHHHHCCCCHHEECCEEEEEEECCCHHHHHHHHHHHHHHH
IQDISSMTAGYMTGFKAGDTVIDVCAAPGGKSINAAISVGADGKVYSRDVSDYKAGLIEE
HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEECCHHHHHHHHHHH
NVLRLGLNNIEVQVKDALVMDESMREKADVVIADLPCSGLGVMGRKPDIRYNITEDKLVS
HHHHHCCCCEEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEECCHHHHHH
LKELQQSILSVVQAYVKQGGIMMYSTCTINSEENEANADWLCKEYGFKKIEYRQILPGKN
HHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEHHEECCCCC
GGTDGFFVAKLRRE
CCCCCEEEEEEECC
>Mature Secondary Structure 
TDSVNLRAVVLDILMEINEKGEFSHLLINNALTKYQYLDKNKRAFISRLSLGTIENRIE
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEE
LDYIIDQYSKTPVRKMKPLIRNICEMSVYQIIYMDNIPDSAVCNEAVKLATKRGFTGLKG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHH
FVNGVLRNIARNKDNISYPDRNKDIEQYLSVKYSMPLWIVKMWHSQLGIDMTEEILAGFK
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHH
QEKKTYIRCNTAKATVEEIKKILSQESVSVAEVEGIQYALEIKDYDYIAGLKSFRDGLYQ
HCCCEEEEECCHHHHHHHHHHHHHHCCCCHHEECCEEEEEEECCCHHHHHHHHHHHHHHH
IQDISSMTAGYMTGFKAGDTVIDVCAAPGGKSINAAISVGADGKVYSRDVSDYKAGLIEE
HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEECCHHHHHHHHHHH
NVLRLGLNNIEVQVKDALVMDESMREKADVVIADLPCSGLGVMGRKPDIRYNITEDKLVS
HHHHHCCCCEEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEECCHHHHHH
LKELQQSILSVVQAYVKQGGIMMYSTCTINSEENEANADWLCKEYGFKKIEYRQILPGKN
HHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHCCCEEEHHEECCCCC
GGTDGFFVAKLRRE
CCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]