| Definition | Eubacterium eligens ATCC 27750 chromosome, complete genome. |
|---|---|
| Accession | NC_012778 |
| Length | 2,144,190 |
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The map label for this gene is udk [H]
Identifier: 238916622
GI number: 238916622
Start: 678635
End: 680242
Strand: Direct
Name: udk [H]
Synonym: EUBELI_00679
Alternate gene names: 238916622
Gene position: 678635-680242 (Clockwise)
Preceding gene: 238916621
Following gene: 238916624
Centisome position: 31.65
GC content: 37.94
Gene sequence:
>1608_bases ATGGGAATGACACTGGCACAGCTTGCAGCAGAGAAGCAGAACGAATATAAGGATGAGATTATACTCGCTAATGTTAATGG TAAGCTTAAAGAACTTGGAGAAGAATATATCCCTGATAGTGATGTTACATTTGTTACAACTTCGACATCAATAGGTAATG AGACATACAGAAGAAGCGTGGTTCTTCTTATGCTTGCAGCCATAGATAAGATACACAGGAATATTGACAGAGTTGTTGTT GAATATTCTTTAAGTAAGGGATTGTACTGTACATTTGATGGAGACTTCAGACCCGACAAAGAGTTTATAGATGAAGTTAA GTCAGTTATGTACAGTATGGTTGAGAAGGATCTTCCAATCAAGAAAGAGCTGATGAAGATATCTGATGCTATGAATCTTT TTAAAGAAAAAGGAATGACAGATAAGACATCACTGTTCAAATACAGAAGAAGTTCATTTGTTAATGTGTATGACCTGAAT GGCTACAAAGATTATTTCTACGGATATATGGCATCTTCTACAGGCATGCTTGGGGTATTTGACATATTCCTGTATGACGA GGGAATAGTGTTACAGCTTCCGGTTAAGAACGCACCTCTTGAAGTTCCTGAATTTAATCCACAAACAAAGCTGTTTAATG TGTTAAAGGAAAGCACAAGCTGGGCAAAGATGCTTGGCATGTCTACGGTTGGAGAACTTAATGACCATATAACTAATGGG GATATGACTTCTTTTATGCTTACGCAGGAGGCACTTCAGGAACAGAAAATTGTTGAGATAGTTGATGAGATAAAGAAAAG ACCGCATACTAAATTCATCATGATAGCTGGTCCATCTTCTTCAGGAAAGACAACATTTTCACATAGATTATCAATTCAGC TTATGGCTAATGGATATAAGCCACACCCAATTGCTGTCGATAATTACTTTGTTGAAAGAGAGCAGACACCTATTGATGAG AATGGTGATTACAATTATGAAGACCTTCATGCAGTAGACATTGAACTTTTTAATAAGCATATGACCAGACTTCTTAACGG AGAAAAAGTGGAGCTGCCGGAATTTAACTTTAAGTTCGGAAGAAAGGAATATAACGGTAATTTCTTACAGTTAGGGGAAG AGGATGTTCTTGTAATAGAAGGAATCCATTGCCTTAATGATGAATTATCATATTCACTTCCAATAGATAGTAAGTTCAAG ATATATATCAGTGCACTTACACAGCTTAATGTAGATGAACATAACAGGGTATCAACTACAGATGGAAGACTTTTAAGAAG GCTTGTAAGAGATTACAGGACAAGAGGAGCATCTGCAAAGAAGACTCTTTCAATGTGGGAGTCTGTAAGAAGAGGCGAAG AGAAGAACATCTTCCCATTCCAGGAGCAGGCGGATGTTATGTTTAACTCAGCAATGCCATATGAACCATGTGTATTAAAA CCATTCGTTGAGCCTATACTTTTCCAGGTAACAGAAGCTGACCCTGAATATCAGGAAGCAAACAGGCTGCTTAAGTTCAT GAACTATTTCCTTCCATGCGGCTACGAGAACGTACCAATCGATTCTATATTACGGGAATTCGTAGGCGGAGGATGTTTCA AGGTGTGA
Upstream 100 bases:
>100_bases AATCCTACGGTTAAGTTAAGATTACAGCAGCTTTCGCAGAAGAATAATATAATTATGGATGCATTGTCATATTATGACTG ATGCGTAAGAGGAGGATGCT
Downstream 100 bases:
>100_bases TGATTGTAAATAAAAACACCCAGGGCTTAGTGCTCTGGGTGTCTGCTTTCAAGTGAATTTCTGTATTCACGGGACATCTC AAAAAGACTTGCGACATAGC
Product: uridine kinase
Products: NA
Alternate protein names: Cytidine monophosphokinase; Uridine monophosphokinase [H]
Number of amino acids: Translated: 535; Mature: 534
Protein sequence:
>535_residues MGMTLAQLAAEKQNEYKDEIILANVNGKLKELGEEYIPDSDVTFVTTSTSIGNETYRRSVVLLMLAAIDKIHRNIDRVVV EYSLSKGLYCTFDGDFRPDKEFIDEVKSVMYSMVEKDLPIKKELMKISDAMNLFKEKGMTDKTSLFKYRRSSFVNVYDLN GYKDYFYGYMASSTGMLGVFDIFLYDEGIVLQLPVKNAPLEVPEFNPQTKLFNVLKESTSWAKMLGMSTVGELNDHITNG DMTSFMLTQEALQEQKIVEIVDEIKKRPHTKFIMIAGPSSSGKTTFSHRLSIQLMANGYKPHPIAVDNYFVEREQTPIDE NGDYNYEDLHAVDIELFNKHMTRLLNGEKVELPEFNFKFGRKEYNGNFLQLGEEDVLVIEGIHCLNDELSYSLPIDSKFK IYISALTQLNVDEHNRVSTTDGRLLRRLVRDYRTRGASAKKTLSMWESVRRGEEKNIFPFQEQADVMFNSAMPYEPCVLK PFVEPILFQVTEADPEYQEANRLLKFMNYFLPCGYENVPIDSILREFVGGGCFKV
Sequences:
>Translated_535_residues MGMTLAQLAAEKQNEYKDEIILANVNGKLKELGEEYIPDSDVTFVTTSTSIGNETYRRSVVLLMLAAIDKIHRNIDRVVV EYSLSKGLYCTFDGDFRPDKEFIDEVKSVMYSMVEKDLPIKKELMKISDAMNLFKEKGMTDKTSLFKYRRSSFVNVYDLN GYKDYFYGYMASSTGMLGVFDIFLYDEGIVLQLPVKNAPLEVPEFNPQTKLFNVLKESTSWAKMLGMSTVGELNDHITNG DMTSFMLTQEALQEQKIVEIVDEIKKRPHTKFIMIAGPSSSGKTTFSHRLSIQLMANGYKPHPIAVDNYFVEREQTPIDE NGDYNYEDLHAVDIELFNKHMTRLLNGEKVELPEFNFKFGRKEYNGNFLQLGEEDVLVIEGIHCLNDELSYSLPIDSKFK IYISALTQLNVDEHNRVSTTDGRLLRRLVRDYRTRGASAKKTLSMWESVRRGEEKNIFPFQEQADVMFNSAMPYEPCVLK PFVEPILFQVTEADPEYQEANRLLKFMNYFLPCGYENVPIDSILREFVGGGCFKV >Mature_534_residues GMTLAQLAAEKQNEYKDEIILANVNGKLKELGEEYIPDSDVTFVTTSTSIGNETYRRSVVLLMLAAIDKIHRNIDRVVVE YSLSKGLYCTFDGDFRPDKEFIDEVKSVMYSMVEKDLPIKKELMKISDAMNLFKEKGMTDKTSLFKYRRSSFVNVYDLNG YKDYFYGYMASSTGMLGVFDIFLYDEGIVLQLPVKNAPLEVPEFNPQTKLFNVLKESTSWAKMLGMSTVGELNDHITNGD MTSFMLTQEALQEQKIVEIVDEIKKRPHTKFIMIAGPSSSGKTTFSHRLSIQLMANGYKPHPIAVDNYFVEREQTPIDEN GDYNYEDLHAVDIELFNKHMTRLLNGEKVELPEFNFKFGRKEYNGNFLQLGEEDVLVIEGIHCLNDELSYSLPIDSKFKI YISALTQLNVDEHNRVSTTDGRLLRRLVRDYRTRGASAKKTLSMWESVRRGEEKNIFPFQEQADVMFNSAMPYEPCVLKP FVEPILFQVTEADPEYQEANRLLKFMNYFLPCGYENVPIDSILREFVGGGCFKV
Specific function: Pyrimidine salvage pathway. [C]
COG id: COG0572
COG function: function code F; Uridine kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the uridine kinase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006083 - InterPro: IPR000764 [H]
Pfam domain/function: PF00485 PRK [H]
EC number: =2.7.1.48 [H]
Molecular weight: Translated: 61459; Mature: 61328
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGMTLAQLAAEKQNEYKDEIILANVNGKLKELGEEYIPDSDVTFVTTSTSIGNETYRRSV CCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH VLLMLAAIDKIHRNIDRVVVEYSLSKGLYCTFDGDFRPDKEFIDEVKSVMYSMVEKDLPI HHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCH KKELMKISDAMNLFKEKGMTDKTSLFKYRRSSFVNVYDLNGYKDYFYGYMASSTGMLGVF HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCHHEE DIFLYDEGIVLQLPVKNAPLEVPEFNPQTKLFNVLKESTSWAKMLGMSTVGELNDHITNG EEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCC DMTSFMLTQEALQEQKIVEIVDEIKKRPHTKFIMIAGPSSSGKTTFSHRLSIQLMANGYK CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEEEECCCC PHPIAVDNYFVEREQTPIDENGDYNYEDLHAVDIELFNKHMTRLLNGEKVELPEFNFKFG CCCEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC RKEYNGNFLQLGEEDVLVIEGIHCLNDELSYSLPIDSKFKIYISALTQLNVDEHNRVSTT CEECCCCEEEECCCCEEEEECCHHHCCCCEEECCCCCCCEEEEEEHHHCCCCCCCCCCCC DGRLLRRLVRDYRTRGASAKKTLSMWESVRRGEEKNIFPFQEQADVMFNSAMPYEPCVLK HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHH PFVEPILFQVTEADPEYQEANRLLKFMNYFLPCGYENVPIDSILREFVGGGCFKV HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure GMTLAQLAAEKQNEYKDEIILANVNGKLKELGEEYIPDSDVTFVTTSTSIGNETYRRSV CCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH VLLMLAAIDKIHRNIDRVVVEYSLSKGLYCTFDGDFRPDKEFIDEVKSVMYSMVEKDLPI HHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCH KKELMKISDAMNLFKEKGMTDKTSLFKYRRSSFVNVYDLNGYKDYFYGYMASSTGMLGVF HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHCCCCCHHEE DIFLYDEGIVLQLPVKNAPLEVPEFNPQTKLFNVLKESTSWAKMLGMSTVGELNDHITNG EEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCC DMTSFMLTQEALQEQKIVEIVDEIKKRPHTKFIMIAGPSSSGKTTFSHRLSIQLMANGYK CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEEEECCCC PHPIAVDNYFVEREQTPIDENGDYNYEDLHAVDIELFNKHMTRLLNGEKVELPEFNFKFG CCCEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC RKEYNGNFLQLGEEDVLVIEGIHCLNDELSYSLPIDSKFKIYISALTQLNVDEHNRVSTT CEECCCCEEEECCCCEEEEECCHHHCCCCEEECCCCCCCEEEEEEHHHCCCCCCCCCCCC DGRLLRRLVRDYRTRGASAKKTLSMWESVRRGEEKNIFPFQEQADVMFNSAMPYEPCVLK HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCHHH PFVEPILFQVTEADPEYQEANRLLKFMNYFLPCGYENVPIDSILREFVGGGCFKV HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]