Click here to switch to the map view.

The map label for this gene is ymdC [C]

Identifier: 238916409

GI number: 238916409

Start: 475488

End: 477002

Strand: Direct

Name: ymdC [C]

Synonym: EUBELI_00463

Alternate gene names: 238916409

Gene position: 475488-477002 (Clockwise)

Preceding gene: 238916408

Following gene: 238916410

Centisome position: 22.18

GC content: 41.58

Gene sequence:

>1515_bases
ATGTATATACAGCACGCCTTTACTGCGCGGGCAGTGATGAGGATAGACAGATATTTAAGGAGTATTGTCGTGAAGTCTTA
CAAAAGGAGAAAACTTATGAAGAGAATAATTCTTGGGGCAGTGATACTGCTTGTGGTGCTTATTGCCGCAATCGTAGCCT
GCGCCCTGATAAGTTACCACAAACAGCCAGAGCTTACTGCTGATGAGATTAATCAGCTTGATGAGCAGGGCATATGGAAA
GAGAGAACAAGTGCCGAGCGGGCGCGCATTATTGAGGATAATGACGAGGCACTTAAAGAGCGTATAAGAATGATAAGCAA
TGCAAAGAGTGAGATTATACTCTCAACATTTGACTTCAGGTCAGATGACAGCGGAAAGCTGATGCTTGGAGCACTTATTG
ATGCTGCAGACAGAGGTGTATCGGTCAATGTTATAGTTGACGGGGTATCCGGTTTTACCAAGATGAAGGGCAATCCTGAT
TTTAAGGCACTTGCGTCATCAGACAATGTTAATGTCAAGATATACAACAAGGTCAATCCTTTTAAGCCGTGGCAGTCAAT
GGGAAGGCTTCATGACAAATATGTCATAGCCGACAGGACTAATTATATACTTGGTGGAAGAAATACATTTAACTATTTTC
TGGGAGCATATCCGGGACATAAGAATTACGACAGAGATGTGCTTGTGTACTGCGAAAGTCCTGATGAAACCAGCTCTGTG
AATGATGTTCTTGCTTATTATGAGAGTGTCTGGAACTATAAGGAGAGCAAGGCATTTTTAAAGAATAACAAATGTGCAGG
CAATAAGAAGGTCAAGGCGGCAAGGAAAGAACTGCTTGATAATTACAACATTTATTATGCAGATAACAAAGATTACCTGA
CCGACACTGATTATACAGACGAAACAGTTGAAGTCAACAATATAGCGCTTCTCAGCAATCCGATAGAATGTGGCGCAAAA
AAGCCGGTAGTGTGGTATCAGCTTACTAAGCTCATGGAGCAGGCGGATTCGCAGGTTAAGATACATACGCCTTATATTAT
CTGCAATGAGTATATGTATGACGGATTAAAGAAGGTATGCGATTCTGTTGAAAATGTGTCATTGATGACTAATTCAGTAG
GCAATAATGGCAATCCATTTGGATCAGCAGATTATTATGCGCATAAGGATAAGGTGCTTGGCACAGGGCTTGAAGTGTGG
GAATATGAAGGCGGATATTCATACCACGGAAAGTCGGTTCTTATAGATGATGATATATCGGTGGTTGGCTCATTTAATAT
TGATATGAGAAGCGTGTATCTTGATACAGAGCTTATGCTTGTTATTGACAGCAAGGAGATTAATGAACAGCTTGGCGGTG
CCATGCAGACGTATGAGCATAGTGCAAGAAAGGCTAATGCTGATGGCACATACGATAATCCATATAATGTGCAGCCTGTA
GCGCTTACGCCTAAGAGAGAACGCAGAATGAAGCTGATTAAGAATTTCCTGTTGTGGACGAGGTATTTGTTCTAA

Upstream 100 bases:

>100_bases
CTTCCACAAGGCGAGAATAAGATTAAGACCAACTATATCAGATAATTTATAATTCTTCATAAATATTTAATGTCATAAGA
GGCGTGCTGTATATATAATT

Downstream 100 bases:

>100_bases
TTAAAATTTTGTGAAAAAAGTTTTGAAAAAAGTCAAAAAAGTGCTTGACATATATCAAGTTTTAATATTATAATAGCAGA
GCAGTTTGCGAGAGAAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MYIQHAFTARAVMRIDRYLRSIVVKSYKRRKLMKRIILGAVILLVVLIAAIVACALISYHKQPELTADEINQLDEQGIWK
ERTSAERARIIEDNDEALKERIRMISNAKSEIILSTFDFRSDDSGKLMLGALIDAADRGVSVNVIVDGVSGFTKMKGNPD
FKALASSDNVNVKIYNKVNPFKPWQSMGRLHDKYVIADRTNYILGGRNTFNYFLGAYPGHKNYDRDVLVYCESPDETSSV
NDVLAYYESVWNYKESKAFLKNNKCAGNKKVKAARKELLDNYNIYYADNKDYLTDTDYTDETVEVNNIALLSNPIECGAK
KPVVWYQLTKLMEQADSQVKIHTPYIICNEYMYDGLKKVCDSVENVSLMTNSVGNNGNPFGSADYYAHKDKVLGTGLEVW
EYEGGYSYHGKSVLIDDDISVVGSFNIDMRSVYLDTELMLVIDSKEINEQLGGAMQTYEHSARKANADGTYDNPYNVQPV
ALTPKRERRMKLIKNFLLWTRYLF

Sequences:

>Translated_504_residues
MYIQHAFTARAVMRIDRYLRSIVVKSYKRRKLMKRIILGAVILLVVLIAAIVACALISYHKQPELTADEINQLDEQGIWK
ERTSAERARIIEDNDEALKERIRMISNAKSEIILSTFDFRSDDSGKLMLGALIDAADRGVSVNVIVDGVSGFTKMKGNPD
FKALASSDNVNVKIYNKVNPFKPWQSMGRLHDKYVIADRTNYILGGRNTFNYFLGAYPGHKNYDRDVLVYCESPDETSSV
NDVLAYYESVWNYKESKAFLKNNKCAGNKKVKAARKELLDNYNIYYADNKDYLTDTDYTDETVEVNNIALLSNPIECGAK
KPVVWYQLTKLMEQADSQVKIHTPYIICNEYMYDGLKKVCDSVENVSLMTNSVGNNGNPFGSADYYAHKDKVLGTGLEVW
EYEGGYSYHGKSVLIDDDISVVGSFNIDMRSVYLDTELMLVIDSKEINEQLGGAMQTYEHSARKANADGTYDNPYNVQPV
ALTPKRERRMKLIKNFLLWTRYLF
>Mature_504_residues
MYIQHAFTARAVMRIDRYLRSIVVKSYKRRKLMKRIILGAVILLVVLIAAIVACALISYHKQPELTADEINQLDEQGIWK
ERTSAERARIIEDNDEALKERIRMISNAKSEIILSTFDFRSDDSGKLMLGALIDAADRGVSVNVIVDGVSGFTKMKGNPD
FKALASSDNVNVKIYNKVNPFKPWQSMGRLHDKYVIADRTNYILGGRNTFNYFLGAYPGHKNYDRDVLVYCESPDETSSV
NDVLAYYESVWNYKESKAFLKNNKCAGNKKVKAARKELLDNYNIYYADNKDYLTDTDYTDETVEVNNIALLSNPIECGAK
KPVVWYQLTKLMEQADSQVKIHTPYIICNEYMYDGLKKVCDSVENVSLMTNSVGNNGNPFGSADYYAHKDKVLGTGLEVW
EYEGGYSYHGKSVLIDDDISVVGSFNIDMRSVYLDTELMLVIDSKEINEQLGGAMQTYEHSARKANADGTYDNPYNVQPV
ALTPKRERRMKLIKNFLLWTRYLF

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57418; Mature: 57418

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIQHAFTARAVMRIDRYLRSIVVKSYKRRKLMKRIILGAVILLVVLIAAIVACALISYH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KQPELTADEINQLDEQGIWKERTSAERARIIEDNDEALKERIRMISNAKSEIILSTFDFR
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCEEEEEEECCC
SDDSGKLMLGALIDAADRGVSVNVIVDGVSGFTKMKGNPDFKALASSDNVNVKIYNKVNP
CCCCCCEEEHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCEEECCCCCEEEEEECCCC
FKPWQSMGRLHDKYVIADRTNYILGGRNTFNYFLGAYPGHKNYDRDVLVYCESPDETSSV
CCHHHHHCCCCCCEEEEECCCEEECCCCHHHHHEECCCCCCCCCCCEEEEECCCCCCCHH
NDVLAYYESVWNYKESKAFLKNNKCAGNKKVKAARKELLDNYNIYYADNKDYLTDTDYTD
HHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
ETVEVNNIALLSNPIECGAKKPVVWYQLTKLMEQADSQVKIHTPYIICNEYMYDGLKKVC
CEEEECCEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCEEEECCEEEEHHHHHHHHHHHH
DSVENVSLMTNSVGNNGNPFGSADYYAHKDKVLGTGLEVWEYEGGYSYHGKSVLIDDDIS
HHHHHHHHEECCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEECCCEEECCCEEEEECCCE
VVGSFNIDMRSVYLDTELMLVIDSKEINEQLGGAMQTYEHSARKANADGTYDNPYNVQPV
EEEECCCEEEEEEECCEEEEEECCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEE
ALTPKRERRMKLIKNFLLWTRYLF
EECCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYIQHAFTARAVMRIDRYLRSIVVKSYKRRKLMKRIILGAVILLVVLIAAIVACALISYH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KQPELTADEINQLDEQGIWKERTSAERARIIEDNDEALKERIRMISNAKSEIILSTFDFR
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCEEEEEEECCC
SDDSGKLMLGALIDAADRGVSVNVIVDGVSGFTKMKGNPDFKALASSDNVNVKIYNKVNP
CCCCCCEEEHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCEEECCCCCEEEEEECCCC
FKPWQSMGRLHDKYVIADRTNYILGGRNTFNYFLGAYPGHKNYDRDVLVYCESPDETSSV
CCHHHHHCCCCCCEEEEECCCEEECCCCHHHHHEECCCCCCCCCCCEEEEECCCCCCCHH
NDVLAYYESVWNYKESKAFLKNNKCAGNKKVKAARKELLDNYNIYYADNKDYLTDTDYTD
HHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
ETVEVNNIALLSNPIECGAKKPVVWYQLTKLMEQADSQVKIHTPYIICNEYMYDGLKKVC
CEEEECCEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCEEEECCEEEEHHHHHHHHHHHH
DSVENVSLMTNSVGNNGNPFGSADYYAHKDKVLGTGLEVWEYEGGYSYHGKSVLIDDDIS
HHHHHHHHEECCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEECCCEEECCCEEEEECCCE
VVGSFNIDMRSVYLDTELMLVIDSKEINEQLGGAMQTYEHSARKANADGTYDNPYNVQPV
EEEECCCEEEEEEECCEEEEEECCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEE
ALTPKRERRMKLIKNFLLWTRYLF
EECCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]