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The map label for this gene is yccH [H]

Identifier: 238916403

GI number: 238916403

Start: 468414

End: 469211

Strand: Reverse

Name: yccH [H]

Synonym: EUBELI_00457

Alternate gene names: 238916403

Gene position: 469211-468414 (Counterclockwise)

Preceding gene: 238916430

Following gene: 238916402

Centisome position: 21.88

GC content: 33.46

Gene sequence:

>798_bases
ATGACACTTTTCGTGTTTAAAATAACATTTATTTTAATATTCTCATCGGTTATAATAACAATAGTTTTATTTTATGGAGA
TTGGATAATGAATATATTTATATGTGATGATGACAATTTGATATGCGAGCAGATTAAAACTCTGTGCGAAAGTTATTATA
TTGAACATAAACTGAAAAGACCTGATATTTACATATTTCACTCTGGTGAAGACATTCTGGCTTCAGATATCAAACCCGAT
ATTGTATATTTAGATATCCAGATGTCTGGCATAGATGGCATTGCCGTTGGTAATTCGCTTGTTAAATCTTATCCGGCAGC
AATAATAATTATTATAACTTCCTTTCCGGAATATCTTGACGAAGCCATGCGCTTTCATGTATTCCGTTATATTTCAAAGC
CTGTTGAAAGTAAACGTTTTATGCGTAACCTTGAAGACGCCATATCTGAATTCAATTCTATTGGCGGCAGGATTATTGTA
AAATGTAAAGGCAAAACATATGTATTATCAGCAAAGGATATCATTATGGTGGAGGTTAATCCTCACTGCCGCAATCTTAC
TATCCACACGGTTTCAGATACATATACAACCACCCAGACTCTCGCCAGCATTAAATCAATGCTTCCGTCTGGGAGCTTTT
ATCAGAGCCATCGATGTTATATAGTGAATATGAATTATATTATGTCTTATAATAACAGCAGAATATATATGGAAAATCAT
CTTTACGCTGATATTGCCTTGCGCAAGTATAATGATTTTTTTAATACCTATTCAGCATTTCTTACAACATTGCGCTAG

Upstream 100 bases:

>100_bases
GAGCTGGTCTTCTCCCATACCCATGCGCATATGTGTACAACGCTTTATATAAGCCTTTAATACCACATCTATTTTATTAA
TTCAATACCAATTGCGTGAA

Downstream 100 bases:

>100_bases
TTTATTAATCAGAGGGGGATTTATGAATTTAATATTGTACTATTTATTTGTATATCTTATAGAAGCCATTATTCTATGGC
TATACTGCAACCGGATATTT

Product: two-component system LytT family response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTLFVFKITFILIFSSVIITIVLFYGDWIMNIFICDDDNLICEQIKTLCESYYIEHKLKRPDIYIFHSGEDILASDIKPD
IVYLDIQMSGIDGIAVGNSLVKSYPAAIIIIITSFPEYLDEAMRFHVFRYISKPVESKRFMRNLEDAISEFNSIGGRIIV
KCKGKTYVLSAKDIIMVEVNPHCRNLTIHTVSDTYTTTQTLASIKSMLPSGSFYQSHRCYIVNMNYIMSYNNSRIYMENH
LYADIALRKYNDFFNTYSAFLTTLR

Sequences:

>Translated_265_residues
MTLFVFKITFILIFSSVIITIVLFYGDWIMNIFICDDDNLICEQIKTLCESYYIEHKLKRPDIYIFHSGEDILASDIKPD
IVYLDIQMSGIDGIAVGNSLVKSYPAAIIIIITSFPEYLDEAMRFHVFRYISKPVESKRFMRNLEDAISEFNSIGGRIIV
KCKGKTYVLSAKDIIMVEVNPHCRNLTIHTVSDTYTTTQTLASIKSMLPSGSFYQSHRCYIVNMNYIMSYNNSRIYMENH
LYADIALRKYNDFFNTYSAFLTTLR
>Mature_264_residues
TLFVFKITFILIFSSVIITIVLFYGDWIMNIFICDDDNLICEQIKTLCESYYIEHKLKRPDIYIFHSGEDILASDIKPDI
VYLDIQMSGIDGIAVGNSLVKSYPAAIIIIITSFPEYLDEAMRFHVFRYISKPVESKRFMRNLEDAISEFNSIGGRIIVK
CKGKTYVLSAKDIIMVEVNPHCRNLTIHTVSDTYTTTQTLASIKSMLPSGSFYQSHRCYIVNMNYIMSYNNSRIYMENHL
YADIALRKYNDFFNTYSAFLTTLR

Specific function: Could be member of the two-component regulatory system yccG/yccH [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=223, Percent_Identity=22.8699551569507, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082052, Length=236, Percent_Identity=25, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30705; Mature: 30574

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLFVFKITFILIFSSVIITIVLFYGDWIMNIFICDDDNLICEQIKTLCESYYIEHKLKR
CEEEHHHHHHHHHHHHHHHHHHHHHCHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
PDIYIFHSGEDILASDIKPDIVYLDIQMSGIDGIAVGNSLVKSYPAAIIIIITSFPEYLD
CCEEEEECCCCHHHCCCCCCEEEEEEEECCCCCCHHCHHHHHHCCCEEEEEEECCHHHHH
EAMRFHVFRYISKPVESKRFMRNLEDAISEFNSIGGRIIVKCKGKTYVLSAKDIIMVEVN
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCEEEEEEC
PHCRNLTIHTVSDTYTTTQTLASIKSMLPSGSFYQSHRCYIVNMNYIMSYNNSRIYMENH
CCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCEEEEECC
LYADIALRKYNDFFNTYSAFLTTLR
EEEEHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TLFVFKITFILIFSSVIITIVLFYGDWIMNIFICDDDNLICEQIKTLCESYYIEHKLKR
EEEHHHHHHHHHHHHHHHHHHHHHCHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCC
PDIYIFHSGEDILASDIKPDIVYLDIQMSGIDGIAVGNSLVKSYPAAIIIIITSFPEYLD
CCEEEEECCCCHHHCCCCCCEEEEEEEECCCCCCHHCHHHHHHCCCEEEEEEECCHHHHH
EAMRFHVFRYISKPVESKRFMRNLEDAISEFNSIGGRIIVKCKGKTYVLSAKDIIMVEVN
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCEEEEEEC
PHCRNLTIHTVSDTYTTTQTLASIKSMLPSGSFYQSHRCYIVNMNYIMSYNNSRIYMENH
CCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCEEEEECC
LYADIALRKYNDFFNTYSAFLTTLR
EEEEHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9106203; 9274031; 9384377 [H]