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The map label for this gene is ycbG [H]

Identifier: 238916385

GI number: 238916385

Start: 450285

End: 451001

Strand: Direct

Name: ycbG [H]

Synonym: EUBELI_00439

Alternate gene names: 238916385

Gene position: 450285-451001 (Clockwise)

Preceding gene: 238916384

Following gene: 238916386

Centisome position: 21.0

GC content: 38.35

Gene sequence:

>717_bases
ATGAGACAGGGGTGTTATAAGCTGAAACAGGATAATATGAATCAGAAGAAAATATCGCAGGAATACGAAAAGGCAATTCA
ATATATTTATGAGCTTATGAAAAGCGGGGAGCTTACAATAGGAAGCAGGCTGCCTACTGAGCGTGCACTTGCAGAAACAC
TTGGAATAGGACGCAATTCAACAAGAGAAGCTTTAAGTATTATGCATGGAATGGGACTTATAGAACGCCGTCAGGGTTCT
GGTAATTATATATCAGAGAATGTCGGTCAGTCTATAAAGCAGACTATATTAATGATGATTGCATTAAAGACTATTACTAA
GCGTGAAGTATGTGAATTCCGCCGCATGATGGAAAAGTCAGTGTGTAATGCAGTAATACATACAGGTCTTACGAAAGAAC
AACAGGAGCGCTTGGAAAGCATGGTTAATCATATGAGCATGGTAACAGGTGAAAACCTTGTTGATACTGATAAAGCATTT
CACGAGGAACTGATTGCAGATACCGGAAACAACCTGTGGATTACACTGATGGAAGCTGTTGTTGAAGTCTACCGCGAATG
GATAGATTATGTCATAAAGCATGCAGATGGAATTAAGAAAAAGAAACTTTTAAAGACACATGAAATGATATATGATAGCC
TTATAAAGAAGGATATTGAGACACTTAATGCAGCGATTGATGAGCATTACGATATAATTGAGGAGCTGCTGGGATAA

Upstream 100 bases:

>100_bases
ACAGGTGAAGAATGGGGAAATGCAGAATATTACGATATATGCATAGATGTTTCAAAGGTTGGGGAAGATGGTGCACTAAG
ACTTATAGAAGCCTATATTA

Downstream 100 bases:

>100_bases
AGAAGTCATAACAAGGAGGATATATGAAATACAAAATTGTTGTATTTGATCTGGACGGAACGATACTTAATACATTGGAA
GACCTTGCAGATAGTACTAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MRQGCYKLKQDNMNQKKISQEYEKAIQYIYELMKSGELTIGSRLPTERALAETLGIGRNSTREALSIMHGMGLIERRQGS
GNYISENVGQSIKQTILMMIALKTITKREVCEFRRMMEKSVCNAVIHTGLTKEQQERLESMVNHMSMVTGENLVDTDKAF
HEELIADTGNNLWITLMEAVVEVYREWIDYVIKHADGIKKKKLLKTHEMIYDSLIKKDIETLNAAIDEHYDIIEELLG

Sequences:

>Translated_238_residues
MRQGCYKLKQDNMNQKKISQEYEKAIQYIYELMKSGELTIGSRLPTERALAETLGIGRNSTREALSIMHGMGLIERRQGS
GNYISENVGQSIKQTILMMIALKTITKREVCEFRRMMEKSVCNAVIHTGLTKEQQERLESMVNHMSMVTGENLVDTDKAF
HEELIADTGNNLWITLMEAVVEVYREWIDYVIKHADGIKKKKLLKTHEMIYDSLIKKDIETLNAAIDEHYDIIEELLG
>Mature_238_residues
MRQGCYKLKQDNMNQKKISQEYEKAIQYIYELMKSGELTIGSRLPTERALAETLGIGRNSTREALSIMHGMGLIERRQGS
GNYISENVGQSIKQTILMMIALKTITKREVCEFRRMMEKSVCNAVIHTGLTKEQQERLESMVNHMSMVTGENLVDTDKAF
HEELIADTGNNLWITLMEAVVEVYREWIDYVIKHADGIKKKKLLKTHEMIYDSLIKKDIETLNAAIDEHYDIIEELLG

Specific function: Repressor For The Uxurba Operon. [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27405; Mature: 27405

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQGCYKLKQDNMNQKKISQEYEKAIQYIYELMKSGELTIGSRLPTERALAETLGIGRNS
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC
TREALSIMHGMGLIERRQGSGNYISENVGQSIKQTILMMIALKTITKREVCEFRRMMEKS
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VCNAVIHTGLTKEQQERLESMVNHMSMVTGENLVDTDKAFHEELIADTGNNLWITLMEAV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VEVYREWIDYVIKHADGIKKKKLLKTHEMIYDSLIKKDIETLNAAIDEHYDIIEELLG
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MRQGCYKLKQDNMNQKKISQEYEKAIQYIYELMKSGELTIGSRLPTERALAETLGIGRNS
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC
TREALSIMHGMGLIERRQGSGNYISENVGQSIKQTILMMIALKTITKREVCEFRRMMEKS
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VCNAVIHTGLTKEQQERLESMVNHMSMVTGENLVDTDKAFHEELIADTGNNLWITLMEAV
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VEVYREWIDYVIKHADGIKKKKLLKTHEMIYDSLIKKDIETLNAAIDEHYDIIEELLG
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]