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The map label for this gene is ydcI [H]

Identifier: 238916339

GI number: 238916339

Start: 403962

End: 406253

Strand: Direct

Name: ydcI [H]

Synonym: EUBELI_00373

Alternate gene names: 238916339

Gene position: 403962-406253 (Clockwise)

Preceding gene: 238916338

Following gene: 238916340

Centisome position: 18.84

GC content: 39.7

Gene sequence:

>2292_bases
ATGGATATCGCAAAGAAGATAGCGGAAGAGCTGGAAATTAAAGTAACACAGGTAGAAGCTGCTGTTAAACTTATAGATGA
GGGGTGTACAATCCCTTTTATTGCAAGATACAGAAAGGAAGTTACAGGAGCGTTAAATGATGAACAGCTCCGTAATCTTG
ATGAGAGATTAAAGTATTTAAGAAATCTTGAAGACAGAAAGACTCAGGTTCTCGCAAGCATTGAAGAACAGGGAAAGCTT
ACAGAAGAACTTAAGGCTGCTATTACAGCAGCAGAAACAATGGTTCTTGTAGAAGATCTTTACAGACCATATAAGCAGAA
GAGAAGAACAAGAGCAACAATTGCGAAAGAGAAAGGTCTTGAACCACTTGCACAGTTCATATATGCACAGGAAGCTACAG
AAGATGTAGAAGTCAAGGCAGCAGAATTTATCAGTGATGAAGAGGGTAAGGAAGTTGCTACAGCACAGGATGCAATAGCA
GGTGCATTAGATATAATTGCAGAGCAGATATCAGATGTTGCAGATTACAGAACATATATCAGAGACATCACAATGAAAGA
AGGAAAGCTTGTTGTAACAGCCAAAGATGAAAAGGCTGAGTCTGTATACGAGAATTATTATGATTATAGCGAGGCACTTT
CAACAATTCCGGGACACAGAATTCTTGCAATTAACAGAGGAGAGGATGAGAAGTTTCTTACTGTTAAGGTAGAAGCACCG
GAAGAGAGAATATTAAGATATCTCGAAAAGAATATTCTTAAAGACAATGCATTTACAGAAGAGTACCTTAAGAACTGTAT
TGCAGATGCATATGGAAGACTTATCGCACCAGCTATTGAAAGAGAGATAAGAAGCAGCCTTACAGAGACAGCAGAGGATG
GGGCAATCAAAGTCTTTGGAAAGAATCTTGAACAGCTTCTTCTTCAGCCACCTATTGCCGGCAAGGTTGTTCTTGGCTGG
GATCCGGCTTTCAGAACAGGCTGTAAGCTTGCAGTTGTAGATCCTACAGGCAAGGTGCTTGCAACTAAAGTTATATACCC
TACAGAACCACACAATAAGGTGGCTGAATCTAAGGCTGAGGTTAAGAAGCTTATAGATAAGTACCACGTTAATCTTATTT
CGTGTGGTAACGGAACAGCTTCAAGAGAATCAGAGAAGATTATTTCAGATATGATACATGAGATGAATCTTCCTGTTGAT
TATGTAATCACTAACGAGGCAGGGGCTTCTGTATATTCAGCAAGTAAACTTGCAACAGAGGAATTCCCTGACTTTGATGT
GGCACAGAGAAGTGCAGTTTCAATAGCAAGACGAGTTCAGGATCCATTGGCAGAGCTTGTCAAGATTGACCCTAAATCAA
TCGGAGTAGGTCAGTATCAGCATGATATGAACCAGAAGAAGTTAGAGAATACACTTACAGGAGTTGTTGAGGACAGCGTT
AATAAGGTTGGAGTAGACTTAAATACTGCATCGGCCTCACTTCTTGAGTATATTTCAGGTATATCTAAGGCAGTAGCTAA
GAATATAGTTGAATATAGAGAGACTAACGGAAGATTCACGAACAGAAAGCAGCTTTTAAAGGTTGCAAAGCTTGGACCTA
AGGCATTTGAACAGTGTGCAGGATTCATGAGAATATCAGGCGGCGATAATCCGTTAGACGCAACAAGCGTACATCCTGAA
AGTTATGAGGCAGCAACAAAGCTTCTTGCACTTTTAGGTTATGATATTAATTCAATAACATCAGGAGAACTTATAGGACT
TAAGAGCAAAGTTGAAGATTTTGCCAAGATGGCGGATGAACTTGGAATAGGAACAATGACACTTGAAGATATAGTTAAAG
AACTTGAGAAGCCGGGAAGAGACCCAAGAGATGAGATGCCTAAGCCTATATTAAGAAAAGATGTTCTTGATATGAAGGAT
TTAACACCGGGCATGATACTTAAGGGAACAGTCAGAAATGTTATTGATTTCGGAGCATTTGTTGATATCGGAGTGCATCA
GGACGGACTTGTACACATTTCCCAGATGAGCAGCACAAAGAGAGTTGAGCACCCTCTTGATGTTGTAAGTGTAGGAGATA
TCGTAGATGTAAGAGTTATAGATGTTGATATCCCTAAGGCAAGAATTTCACTTTCAATGATACTTGATGAAAAAGAGGCA
GCTAACAGAAAGTACACTAAGGATAATTCCAATAATAAGAATAACAGAAACAACGGCAAAGGAAACAGACAGGACAGAAA
GCCTAAGAAGGAAGGCCTTAACCTTTCAGGTCTTGCCAAGTTCATGCATTAA

Upstream 100 bases:

>100_bases
CATGGAGTGCGGGGATTCTTGCGTTTATGCAACTGTTGATAAACTTTGATGAAATTGATATAATTAAATGTAATATGCGT
ATGAAAACGGAGGAAGATTA

Downstream 100 bases:

>100_bases
TAGGAGTACTGTATGGAAGATAGAATAGAATTTGACAGCGTAATTACAGAGAAAGCACTTAATGATTTCAAGATGTATCA
CATTTTTCACAATGTTGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 763; Mature: 763

Protein sequence:

>763_residues
MDIAKKIAEELEIKVTQVEAAVKLIDEGCTIPFIARYRKEVTGALNDEQLRNLDERLKYLRNLEDRKTQVLASIEEQGKL
TEELKAAITAAETMVLVEDLYRPYKQKRRTRATIAKEKGLEPLAQFIYAQEATEDVEVKAAEFISDEEGKEVATAQDAIA
GALDIIAEQISDVADYRTYIRDITMKEGKLVVTAKDEKAESVYENYYDYSEALSTIPGHRILAINRGEDEKFLTVKVEAP
EERILRYLEKNILKDNAFTEEYLKNCIADAYGRLIAPAIEREIRSSLTETAEDGAIKVFGKNLEQLLLQPPIAGKVVLGW
DPAFRTGCKLAVVDPTGKVLATKVIYPTEPHNKVAESKAEVKKLIDKYHVNLISCGNGTASRESEKIISDMIHEMNLPVD
YVITNEAGASVYSASKLATEEFPDFDVAQRSAVSIARRVQDPLAELVKIDPKSIGVGQYQHDMNQKKLENTLTGVVEDSV
NKVGVDLNTASASLLEYISGISKAVAKNIVEYRETNGRFTNRKQLLKVAKLGPKAFEQCAGFMRISGGDNPLDATSVHPE
SYEAATKLLALLGYDINSITSGELIGLKSKVEDFAKMADELGIGTMTLEDIVKELEKPGRDPRDEMPKPILRKDVLDMKD
LTPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSSTKRVEHPLDVVSVGDIVDVRVIDVDIPKARISLSMILDEKEA
ANRKYTKDNSNNKNNRNNGKGNRQDRKPKKEGLNLSGLAKFMH

Sequences:

>Translated_763_residues
MDIAKKIAEELEIKVTQVEAAVKLIDEGCTIPFIARYRKEVTGALNDEQLRNLDERLKYLRNLEDRKTQVLASIEEQGKL
TEELKAAITAAETMVLVEDLYRPYKQKRRTRATIAKEKGLEPLAQFIYAQEATEDVEVKAAEFISDEEGKEVATAQDAIA
GALDIIAEQISDVADYRTYIRDITMKEGKLVVTAKDEKAESVYENYYDYSEALSTIPGHRILAINRGEDEKFLTVKVEAP
EERILRYLEKNILKDNAFTEEYLKNCIADAYGRLIAPAIEREIRSSLTETAEDGAIKVFGKNLEQLLLQPPIAGKVVLGW
DPAFRTGCKLAVVDPTGKVLATKVIYPTEPHNKVAESKAEVKKLIDKYHVNLISCGNGTASRESEKIISDMIHEMNLPVD
YVITNEAGASVYSASKLATEEFPDFDVAQRSAVSIARRVQDPLAELVKIDPKSIGVGQYQHDMNQKKLENTLTGVVEDSV
NKVGVDLNTASASLLEYISGISKAVAKNIVEYRETNGRFTNRKQLLKVAKLGPKAFEQCAGFMRISGGDNPLDATSVHPE
SYEAATKLLALLGYDINSITSGELIGLKSKVEDFAKMADELGIGTMTLEDIVKELEKPGRDPRDEMPKPILRKDVLDMKD
LTPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSSTKRVEHPLDVVSVGDIVDVRVIDVDIPKARISLSMILDEKEA
ANRKYTKDNSNNKNNRNNGKGNRQDRKPKKEGLNLSGLAKFMH
>Mature_763_residues
MDIAKKIAEELEIKVTQVEAAVKLIDEGCTIPFIARYRKEVTGALNDEQLRNLDERLKYLRNLEDRKTQVLASIEEQGKL
TEELKAAITAAETMVLVEDLYRPYKQKRRTRATIAKEKGLEPLAQFIYAQEATEDVEVKAAEFISDEEGKEVATAQDAIA
GALDIIAEQISDVADYRTYIRDITMKEGKLVVTAKDEKAESVYENYYDYSEALSTIPGHRILAINRGEDEKFLTVKVEAP
EERILRYLEKNILKDNAFTEEYLKNCIADAYGRLIAPAIEREIRSSLTETAEDGAIKVFGKNLEQLLLQPPIAGKVVLGW
DPAFRTGCKLAVVDPTGKVLATKVIYPTEPHNKVAESKAEVKKLIDKYHVNLISCGNGTASRESEKIISDMIHEMNLPVD
YVITNEAGASVYSASKLATEEFPDFDVAQRSAVSIARRVQDPLAELVKIDPKSIGVGQYQHDMNQKKLENTLTGVVEDSV
NKVGVDLNTASASLLEYISGISKAVAKNIVEYRETNGRFTNRKQLLKVAKLGPKAFEQCAGFMRISGGDNPLDATSVHPE
SYEAATKLLALLGYDINSITSGELIGLKSKVEDFAKMADELGIGTMTLEDIVKELEKPGRDPRDEMPKPILRKDVLDMKD
LTPGMILKGTVRNVIDFGAFVDIGVHQDGLVHISQMSSTKRVEHPLDVVSVGDIVDVRVIDVDIPKARISLSMILDEKEA
ANRKYTKDNSNNKNNRNNGKGNRQDRKPKKEGLNLSGLAKFMH

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=791, Percent_Identity=36.0303413400759, Blast_Score=442, Evalue=1e-124,
Organism=Homo sapiens, GI27597090, Length=611, Percent_Identity=25.0409165302782, Blast_Score=117, Evalue=6e-26,
Organism=Escherichia coli, GI87082262, Length=765, Percent_Identity=47.9738562091503, Blast_Score=655, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=46.0526315789474, Blast_Score=73, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17511129, Length=758, Percent_Identity=32.5857519788918, Blast_Score=302, Evalue=4e-82,
Organism=Caenorhabditis elegans, GI17552892, Length=311, Percent_Identity=28.2958199356913, Blast_Score=90, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6321552, Length=246, Percent_Identity=29.6747967479675, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI62484314, Length=764, Percent_Identity=33.7696335078534, Blast_Score=399, Evalue=1e-111,
Organism=Drosophila melanogaster, GI24640080, Length=713, Percent_Identity=23.1416549789621, Blast_Score=113, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84745; Mature: 84745

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIAKKIAEELEIKVTQVEAAVKLIDEGCTIPFIARYRKEVTGALNDEQLRNLDERLKYL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RNLEDRKTQVLASIEEQGKLTEELKAAITAAETMVLVEDLYRPYKQKRRTRATIAKEKGL
HCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EPLAQFIYAQEATEDVEVKAAEFISDEEGKEVATAQDAIAGALDIIAEQISDVADYRTYI
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDITMKEGKLVVTAKDEKAESVYENYYDYSEALSTIPGHRILAINRGEDEKFLTVKVEAP
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
EERILRYLEKNILKDNAFTEEYLKNCIADAYGRLIAPAIEREIRSSLTETAEDGAIKVFG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
KNLEQLLLQPPIAGKVVLGWDPAFRTGCKLAVVDPTGKVLATKVIYPTEPHNKVAESKAE
CCHHHHHHCCCCCCEEEECCCHHHHCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
VKKLIDKYHVNLISCGNGTASRESEKIISDMIHEMNLPVDYVITNEAGASVYSASKLATE
HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH
EFPDFDVAQRSAVSIARRVQDPLAELVKIDPKSIGVGQYQHDMNQKKLENTLTGVVEDSV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NKVGVDLNTASASLLEYISGISKAVAKNIVEYRETNGRFTNRKQLLKVAKLGPKAFEQCA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHC
GFMRISGGDNPLDATSVHPESYEAATKLLALLGYDINSITSGELIGLKSKVEDFAKMADE
CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHHH
LGIGTMTLEDIVKELEKPGRDPRDEMPKPILRKDVLDMKDLTPGMILKGTVRNVIDFGAF
HCCCCCHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCC
VDIGVHQDGLVHISQMSSTKRVEHPLDVVSVGDIVDVRVIDVDIPKARISLSMILDEKEA
EEECCCCCCCEEHHHHCCHHHHCCCCCCEECCCEEEEEEEEECCCHHHHHHHHHCCCHHH
ANRKYTKDNSNNKNNRNNGKGNRQDRKPKKEGLNLSGLAKFMH
HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MDIAKKIAEELEIKVTQVEAAVKLIDEGCTIPFIARYRKEVTGALNDEQLRNLDERLKYL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
RNLEDRKTQVLASIEEQGKLTEELKAAITAAETMVLVEDLYRPYKQKRRTRATIAKEKGL
HCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EPLAQFIYAQEATEDVEVKAAEFISDEEGKEVATAQDAIAGALDIIAEQISDVADYRTYI
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDITMKEGKLVVTAKDEKAESVYENYYDYSEALSTIPGHRILAINRGEDEKFLTVKVEAP
HHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
EERILRYLEKNILKDNAFTEEYLKNCIADAYGRLIAPAIEREIRSSLTETAEDGAIKVFG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
KNLEQLLLQPPIAGKVVLGWDPAFRTGCKLAVVDPTGKVLATKVIYPTEPHNKVAESKAE
CCHHHHHHCCCCCCEEEECCCHHHHCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
VKKLIDKYHVNLISCGNGTASRESEKIISDMIHEMNLPVDYVITNEAGASVYSASKLATE
HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH
EFPDFDVAQRSAVSIARRVQDPLAELVKIDPKSIGVGQYQHDMNQKKLENTLTGVVEDSV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NKVGVDLNTASASLLEYISGISKAVAKNIVEYRETNGRFTNRKQLLKVAKLGPKAFEQCA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHC
GFMRISGGDNPLDATSVHPESYEAATKLLALLGYDINSITSGELIGLKSKVEDFAKMADE
CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHHHHHHHH
LGIGTMTLEDIVKELEKPGRDPRDEMPKPILRKDVLDMKDLTPGMILKGTVRNVIDFGAF
HCCCCCHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCC
VDIGVHQDGLVHISQMSSTKRVEHPLDVVSVGDIVDVRVIDVDIPKARISLSMILDEKEA
EEECCCCCCCEEHHHHCCHHHHCCCCCCEECCCEEEEEEEEECCCHHHHHHHHHCCCHHH
ANRKYTKDNSNNKNNRNNGKGNRQDRKPKKEGLNLSGLAKFMH
HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]