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The map label for this gene is ybiR [C]

Identifier: 238916312

GI number: 238916312

Start: 370865

End: 371983

Strand: Direct

Name: ybiR [C]

Synonym: EUBELI_00346

Alternate gene names: 238916312

Gene position: 370865-371983 (Clockwise)

Preceding gene: 238916306

Following gene: 238916313

Centisome position: 17.3

GC content: 39.86

Gene sequence:

>1119_bases
ATGGAGAGAATCTATAATTATTTAAAGAAAGATGCAGTACTTACAATAAGCTGGGTGCTTGCAATCGTTTCAATGTTTTT
TATAAAACCAGACAAAGCATATGCCGGTTACATAGACTGGCGTTCACTTGGAATATTGTGGAGTTTGATGATAATAACGA
AAGGCTATATGCAGAACGGCATTTTTGAAAAAATCGGACATGCCCTTCTTACAAGAACACGAAAAATGTGGCAGCTTATT
GCAGTTCTTGTAGGACTGAATTTCTTTAGCAGCATGATTATAACAAATGATGTGTCGCTTATAACATTTGTCCCATTTGC
AATAATGATGCTTAAGCAGTGTGGCAGGCAGGAGCTTATGATACCAGTAGTTGTATTGCAGACGATAGCTGCGAATCTTG
GAAGTATGCTGACACCGATTGGTAATCCGCAGAATCTGTATCTGTATGGGCTGGCTGGAACAGGAATCGGAGAATTCATA
ATGTGGCTGCTGCCATACACAATAGTTTCAGCCCTGCTTCTGGTTATATCAATTCTTCTTATAAAGAATAAGAACGAAAT
AATATGTATAGAAGATACAGACAGCGAAGCTGCACATAATACATCAGTGCCACGAGTCATGGCCTACAGTGTATTATTTA
TTCTTGCACTTTTAGTTGTCGCAAGAGTGCTGACATGGTATATACTTGCAGCAGCCGTTCTCATAACGGTATTACTGCTG
GAGAAAAATGTGCTTGCGAAGGCAGATTATGCACTGCTATTAACATTTATCGGATTCTTCATATTCACAGGCAATATGGG
AAGGGTTGAACCTGTGGCACATTTTCTTGCAGGAATCGTGAATGGCCGGGAGCTGGAAGCCGGAATAATAACAAGCCAGT
GCATAAGCAATGTTCCGGCGGCACTGTTATTATCAGAATTTACAGACAATATAAAGAACCTCGCAATAGGGGTGAACATC
GGAGGTCTTGGTACGCTTATAGCGTCAATGGCGAGCCTCATATCGTACAAGCTGTATGCCAATGAAGTGCCAGAGAAAAA
GGGAAAATATTTTGCCGTATTTACAGTTTACAATATAATATTTCTAGTGGTGCTGTATGTGTTTACGAAATTGATATAA

Upstream 100 bases:

>100_bases
TATTATAAACTTACAGAATTTATTTGACAACTAATACTGTAAAGGATAAAAAATATATTGTAAAATATAAAGCAATTACT
ATATTAAGAGAGAAAATGTC

Downstream 100 bases:

>100_bases
CATATGGAAAATCTTACATAAAACAGGAGGGGAAGAAATGTATGGATGTCCAGGTTGTGGAGCCGAGTTAAAATACGATA
TAAAAACAGGTAAATTGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MERIYNYLKKDAVLTISWVLAIVSMFFIKPDKAYAGYIDWRSLGILWSLMIITKGYMQNGIFEKIGHALLTRTRKMWQLI
AVLVGLNFFSSMIITNDVSLITFVPFAIMMLKQCGRQELMIPVVVLQTIAANLGSMLTPIGNPQNLYLYGLAGTGIGEFI
MWLLPYTIVSALLLVISILLIKNKNEIICIEDTDSEAAHNTSVPRVMAYSVLFILALLVVARVLTWYILAAAVLITVLLL
EKNVLAKADYALLLTFIGFFIFTGNMGRVEPVAHFLAGIVNGRELEAGIITSQCISNVPAALLLSEFTDNIKNLAIGVNI
GGLGTLIASMASLISYKLYANEVPEKKGKYFAVFTVYNIIFLVVLYVFTKLI

Sequences:

>Translated_372_residues
MERIYNYLKKDAVLTISWVLAIVSMFFIKPDKAYAGYIDWRSLGILWSLMIITKGYMQNGIFEKIGHALLTRTRKMWQLI
AVLVGLNFFSSMIITNDVSLITFVPFAIMMLKQCGRQELMIPVVVLQTIAANLGSMLTPIGNPQNLYLYGLAGTGIGEFI
MWLLPYTIVSALLLVISILLIKNKNEIICIEDTDSEAAHNTSVPRVMAYSVLFILALLVVARVLTWYILAAAVLITVLLL
EKNVLAKADYALLLTFIGFFIFTGNMGRVEPVAHFLAGIVNGRELEAGIITSQCISNVPAALLLSEFTDNIKNLAIGVNI
GGLGTLIASMASLISYKLYANEVPEKKGKYFAVFTVYNIIFLVVLYVFTKLI
>Mature_372_residues
MERIYNYLKKDAVLTISWVLAIVSMFFIKPDKAYAGYIDWRSLGILWSLMIITKGYMQNGIFEKIGHALLTRTRKMWQLI
AVLVGLNFFSSMIITNDVSLITFVPFAIMMLKQCGRQELMIPVVVLQTIAANLGSMLTPIGNPQNLYLYGLAGTGIGEFI
MWLLPYTIVSALLLVISILLIKNKNEIICIEDTDSEAAHNTSVPRVMAYSVLFILALLVVARVLTWYILAAAVLITVLLL
EKNVLAKADYALLLTFIGFFIFTGNMGRVEPVAHFLAGIVNGRELEAGIITSQCISNVPAALLLSEFTDNIKNLAIGVNI
GGLGTLIASMASLISYKLYANEVPEKKGKYFAVFTVYNIIFLVVLYVFTKLI

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=326, Percent_Identity=28.5276073619632, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 41261; Mature: 41261

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERIYNYLKKDAVLTISWVLAIVSMFFIKPDKAYAGYIDWRSLGILWSLMIITKGYMQNG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
IFEKIGHALLTRTRKMWQLIAVLVGLNFFSSMIITNDVSLITFVPFAIMMLKQCGRQELM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHH
IPVVVLQTIAANLGSMLTPIGNPQNLYLYGLAGTGIGEFIMWLLPYTIVSALLLVISILL
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IKNKNEIICIEDTDSEAAHNTSVPRVMAYSVLFILALLVVARVLTWYILAAAVLITVLLL
HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKNVLAKADYALLLTFIGFFIFTGNMGRVEPVAHFLAGIVNGRELEAGIITSQCISNVPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
ALLLSEFTDNIKNLAIGVNIGGLGTLIASMASLISYKLYANEVPEKKGKYFAVFTVYNII
HHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH
FLVVLYVFTKLI
HHHHHHHHHHCC
>Mature Secondary Structure
MERIYNYLKKDAVLTISWVLAIVSMFFIKPDKAYAGYIDWRSLGILWSLMIITKGYMQNG
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
IFEKIGHALLTRTRKMWQLIAVLVGLNFFSSMIITNDVSLITFVPFAIMMLKQCGRQELM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHH
IPVVVLQTIAANLGSMLTPIGNPQNLYLYGLAGTGIGEFIMWLLPYTIVSALLLVISILL
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IKNKNEIICIEDTDSEAAHNTSVPRVMAYSVLFILALLVVARVLTWYILAAAVLITVLLL
HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKNVLAKADYALLLTFIGFFIFTGNMGRVEPVAHFLAGIVNGRELEAGIITSQCISNVPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
ALLLSEFTDNIKNLAIGVNIGGLGTLIASMASLISYKLYANEVPEKKGKYFAVFTVYNII
HHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHH
FLVVLYVFTKLI
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]