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The map label for this gene is ybaF [H]

Identifier: 238916296

GI number: 238916296

Start: 352129

End: 352986

Strand: Direct

Name: ybaF [H]

Synonym: EUBELI_00330

Alternate gene names: 238916296

Gene position: 352129-352986 (Clockwise)

Preceding gene: 238916295

Following gene: 238916297

Centisome position: 16.42

GC content: 37.41

Gene sequence:

>858_bases
ATGAAGCGAAGGAAAGCATTTTGTCAGCACTGGGATAAAGGAAGTAATATGATTCGAGATATAACAATAGGACAGTATTA
TCAGGCAGATTCGGTAATACACAGACTGGACCCGAGAGTTAAGCTTATGGGTACCTTAATATTCGTAATATCCCTGTTTC
TGGGAAGTAATATATGGCTGTATCTGGTTGTAGCAGCATTTTTGGCGATAGTAATTGCACTGTCAAAGATACCTCTTAAA
TTCATTCTTAAAGGTCTTAAGGCAATTGTAATATTAATTGTAATCAGTGCGGCATTTAATCTGTTTCTGACACCAGGAAC
GCCTCTTATTAAGATATGGAAGCTGACGATAACGCATGAAGGCCTTAATACGGCTGTATTCATGGTTATAAGGCTTATTT
TTCTTATTATGGGTTCATCCCTTATGACACTTACAACAACGCCTAATAACCTTACAGACGGGCTTGAAAAGGGACTTGGT
TTTCTTAAATATATTAAAGTTCCGGTTCATGAAATTGCAATGATGATGTCTATTGCATTGAGGTTTATCCCGATTCTTAT
TGAGGAAACAGATAAGATAATGAAGGCACAGATGGCGCGAGGTGCAGACTTTGAGTCAGGTAATATTATTAAGAAGGCAA
AAGCTATGATACCTATTCTTGTACCTTTATTCATATCAGCGTTCAGAAGAGCAAATGAACTTGCAATGGCTATGGAGGCG
AGATGTTATCACGGTTCTGAGGGAAGAACCAAGATGAAGCCGCTGAAATACTCCAGAAGAGATATTAATGCATATCTTAT
TATCGCATTGTATCTTGCATGCATTATTGTGGTTAAGGTTACGCTTAAGTTAATATAA

Upstream 100 bases:

>100_bases
GAGCTGGAGGCAATAGGACTAGCAGCACCACAGGTAACTTATTTGATGAATGATTTAAAACAGGCAGGCTTTGATGTTAA
TACAGATGCTATCACAATAG

Downstream 100 bases:

>100_bases
TCAGTGTGTATACAGATATGACATTTATAATAGGCTGATTCTGGCTGAATAAGGAGGAACGCCATGCGAAGAATAAAGCT
TATCGTAGCTTATGATGGAA

Product: cobalt/nickel transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKRRKAFCQHWDKGSNMIRDITIGQYYQADSVIHRLDPRVKLMGTLIFVISLFLGSNIWLYLVVAAFLAIVIALSKIPLK
FILKGLKAIVILIVISAAFNLFLTPGTPLIKIWKLTITHEGLNTAVFMVIRLIFLIMGSSLMTLTTTPNNLTDGLEKGLG
FLKYIKVPVHEIAMMMSIALRFIPILIEETDKIMKAQMARGADFESGNIIKKAKAMIPILVPLFISAFRRANELAMAMEA
RCYHGSEGRTKMKPLKYSRRDINAYLIIALYLACIIVVKVTLKLI

Sequences:

>Translated_285_residues
MKRRKAFCQHWDKGSNMIRDITIGQYYQADSVIHRLDPRVKLMGTLIFVISLFLGSNIWLYLVVAAFLAIVIALSKIPLK
FILKGLKAIVILIVISAAFNLFLTPGTPLIKIWKLTITHEGLNTAVFMVIRLIFLIMGSSLMTLTTTPNNLTDGLEKGLG
FLKYIKVPVHEIAMMMSIALRFIPILIEETDKIMKAQMARGADFESGNIIKKAKAMIPILVPLFISAFRRANELAMAMEA
RCYHGSEGRTKMKPLKYSRRDINAYLIIALYLACIIVVKVTLKLI
>Mature_285_residues
MKRRKAFCQHWDKGSNMIRDITIGQYYQADSVIHRLDPRVKLMGTLIFVISLFLGSNIWLYLVVAAFLAIVIALSKIPLK
FILKGLKAIVILIVISAAFNLFLTPGTPLIKIWKLTITHEGLNTAVFMVIRLIFLIMGSSLMTLTTTPNNLTDGLEKGLG
FLKYIKVPVHEIAMMMSIALRFIPILIEETDKIMKAQMARGADFESGNIIKKAKAMIPILVPLFISAFRRANELAMAMEA
RCYHGSEGRTKMKPLKYSRRDINAYLIIALYLACIIVVKVTLKLI

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 32102; Mature: 32102

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRKAFCQHWDKGSNMIRDITIGQYYQADSVIHRLDPRVKLMGTLIFVISLFLGSNIWL
CCCHHHHHHHHHCCCCEEHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHH
YLVVAAFLAIVIALSKIPLKFILKGLKAIVILIVISAAFNLFLTPGTPLIKIWKLTITHE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEEC
GLNTAVFMVIRLIFLIMGSSLMTLTTTPNNLTDGLEKGLGFLKYIKVPVHEIAMMMSIAL
CHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFIPILIEETDKIMKAQMARGADFESGNIIKKAKAMIPILVPLFISAFRRANELAMAMEA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCYHGSEGRTKMKPLKYSRRDINAYLIIALYLACIIVVKVTLKLI
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRRKAFCQHWDKGSNMIRDITIGQYYQADSVIHRLDPRVKLMGTLIFVISLFLGSNIWL
CCCHHHHHHHHHCCCCEEHEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHH
YLVVAAFLAIVIALSKIPLKFILKGLKAIVILIVISAAFNLFLTPGTPLIKIWKLTITHE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEEEEEC
GLNTAVFMVIRLIFLIMGSSLMTLTTTPNNLTDGLEKGLGFLKYIKVPVHEIAMMMSIAL
CHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFIPILIEETDKIMKAQMARGADFESGNIIKKAKAMIPILVPLFISAFRRANELAMAMEA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RCYHGSEGRTKMKPLKYSRRDINAYLIIALYLACIIVVKVTLKLI
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]