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The map label for this gene is secY [H]

Identifier: 238916285

GI number: 238916285

Start: 344186

End: 345505

Strand: Direct

Name: secY [H]

Synonym: EUBELI_00319

Alternate gene names: 238916285

Gene position: 344186-345505 (Clockwise)

Preceding gene: 238916284

Following gene: 238916286

Centisome position: 16.05

GC content: 35.61

Gene sequence:

>1320_bases
ATGTTTAAAACACTTGTAGGCGCTTTTAAGAACAAAGATATAAGAAAAAAGATAATATATACATTATTAATTCTTGTTGT
TGTCAGAGTTGGAAGTTTACTTCCAATCCCTGGTGTAGACACCAATTATTTTAGTAGCTTACTTAGTGGAATTAATACTG
GTGATTTAAGTTATCTCAGTGCTTTTACAGGAGGTTCATTCGAAAGAATGTCCCTCTTTGCGCTGAGCATAACACCATAT
ATCACATCTTCAATCATTATGCAGCTTCTCACAATTGCAATTCCTAAATTAGAGGAAATGCAGAAAGAGGGAGAAGATGG
TAGAAAGAAGATTGCATCGATTACAAGATACGTAACAATTGGTCTTTCTTTAATAGAAAGTATCGCTATGGCGGTTGGCT
TTGGTAGAACAGGTCTTATCAAAGATTCAGCACAGCTTAGCACATTACATTATGTAGTATGTATAATCGTAGTTGTAGCT
GCACTTACAGCTGGTTCAGCAGTATTAATGTGGCTTGGTGAGCGAATCACTGAAAAGGGTGTTGGAAATGGTATTTCAAT
TGTACTTTTAATTAATATCATATCAGGTATGCCTAGTGATTTTGCTACATTATATAGCACATTTGTTGCACCAAAGACAC
CTGCAAAGGGTGTTTTAGCAGCAGTAATAATATTAGCAATTCTTATTGTTATGGTAGTTCTTGTATGCTTCCTTCAGGAT
GGAGAGAGAAGAATTCCTGTTCAGTACTCTCAGAAGGTCAGCGGTAGAAGAACAGTTGGCGGACAGTCAACAAACATTCC
ATTAAAGGTTAATACTGCAGGTGTTATGCCAATTATTTTCGCATCATCACTTATGCAGTTTCCAGTTATAATTGCACAGT
TATTTGGTAAATCATATGAGTGGACCAGATATCTCAGCTCATCATACTGGTGCAGAGTTGAAGCTCCAAAGTATTCAATT
GGTTTATTAGTATACATAGTACTGCTTATAATATTTGCATACTTCTATACATCAATAACATTTAACCCAATTGAGGTAGC
TGATAACTTAAAGAAGGCTGGTGGAGTTATCCCAGGAATAACACCTGGTAAGTCTACAAGCGAATATCTTAACAAAATAC
TTAATTATATCGTATTTATTGGAGCTGTCGGACTTTTAATAATTGCCCTCATTCCAATAATGTGTACAGGATTCTTTAAT
GCTTCTGTTTCATTCGGTGGAACATCAATTATCATTATTGTTGGTGTTGTACTTGAGACATTAAAGCAGATTGAGTCTCA
GATGTGCAATCGTTACTATAAGGGATTCCTCAGTGAGTAA

Upstream 100 bases:

>100_bases
GGCGAGCTTACAAAGAAGCTTACTGTTAAGGCTAACGCATTCAGTGCTGCAGCTAAGGAGAAGATCGAGGCTCTCGGCGG
AACCTGCGAGGTGATCTAAT

Downstream 100 bases:

>100_bases
TTCTTTATATCACGGATGATATTAGTATAAAATATTGACTTGCCCGGTTTATGCCGGGTAAGTCCTTTGTGTATTATGAT
TTATTACGAATATTTATGAT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MFKTLVGAFKNKDIRKKIIYTLLILVVVRVGSLLPIPGVDTNYFSSLLSGINTGDLSYLSAFTGGSFERMSLFALSITPY
ITSSIIMQLLTIAIPKLEEMQKEGEDGRKKIASITRYVTIGLSLIESIAMAVGFGRTGLIKDSAQLSTLHYVVCIIVVVA
ALTAGSAVLMWLGERITEKGVGNGISIVLLINIISGMPSDFATLYSTFVAPKTPAKGVLAAVIILAILIVMVVLVCFLQD
GERRIPVQYSQKVSGRRTVGGQSTNIPLKVNTAGVMPIIFASSLMQFPVIIAQLFGKSYEWTRYLSSSYWCRVEAPKYSI
GLLVYIVLLIIFAYFYTSITFNPIEVADNLKKAGGVIPGITPGKSTSEYLNKILNYIVFIGAVGLLIIALIPIMCTGFFN
ASVSFGGTSIIIIVGVVLETLKQIESQMCNRYYKGFLSE

Sequences:

>Translated_439_residues
MFKTLVGAFKNKDIRKKIIYTLLILVVVRVGSLLPIPGVDTNYFSSLLSGINTGDLSYLSAFTGGSFERMSLFALSITPY
ITSSIIMQLLTIAIPKLEEMQKEGEDGRKKIASITRYVTIGLSLIESIAMAVGFGRTGLIKDSAQLSTLHYVVCIIVVVA
ALTAGSAVLMWLGERITEKGVGNGISIVLLINIISGMPSDFATLYSTFVAPKTPAKGVLAAVIILAILIVMVVLVCFLQD
GERRIPVQYSQKVSGRRTVGGQSTNIPLKVNTAGVMPIIFASSLMQFPVIIAQLFGKSYEWTRYLSSSYWCRVEAPKYSI
GLLVYIVLLIIFAYFYTSITFNPIEVADNLKKAGGVIPGITPGKSTSEYLNKILNYIVFIGAVGLLIIALIPIMCTGFFN
ASVSFGGTSIIIIVGVVLETLKQIESQMCNRYYKGFLSE
>Mature_439_residues
MFKTLVGAFKNKDIRKKIIYTLLILVVVRVGSLLPIPGVDTNYFSSLLSGINTGDLSYLSAFTGGSFERMSLFALSITPY
ITSSIIMQLLTIAIPKLEEMQKEGEDGRKKIASITRYVTIGLSLIESIAMAVGFGRTGLIKDSAQLSTLHYVVCIIVVVA
ALTAGSAVLMWLGERITEKGVGNGISIVLLINIISGMPSDFATLYSTFVAPKTPAKGVLAAVIILAILIVMVVLVCFLQD
GERRIPVQYSQKVSGRRTVGGQSTNIPLKVNTAGVMPIIFASSLMQFPVIIAQLFGKSYEWTRYLSSSYWCRVEAPKYSI
GLLVYIVLLIIFAYFYTSITFNPIEVADNLKKAGGVIPGITPGKSTSEYLNKILNYIVFIGAVGLLIIALIPIMCTGFFN
ASVSFGGTSIIIIVGVVLETLKQIESQMCNRYYKGFLSE

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=431, Percent_Identity=37.3549883990719, Blast_Score=276, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47682; Mature: 47682

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKTLVGAFKNKDIRKKIIYTLLILVVVRVGSLLPIPGVDTNYFSSLLSGINTGDLSYLS
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCHHHHH
AFTGGSFERMSLFALSITPYITSSIIMQLLTIAIPKLEEMQKEGEDGRKKIASITRYVTI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHH
GLSLIESIAMAVGFGRTGLIKDSAQLSTLHYVVCIIVVVAALTAGSAVLMWLGERITEKG
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
VGNGISIVLLINIISGMPSDFATLYSTFVAPKTPAKGVLAAVIILAILIVMVVLVCFLQD
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
GERRIPVQYSQKVSGRRTVGGQSTNIPLKVNTAGVMPIIFASSLMQFPVIIAQLFGKSYE
CCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
WTRYLSSSYWCRVEAPKYSIGLLVYIVLLIIFAYFYTSITFNPIEVADNLKKAGGVIPGI
HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
TPGKSTSEYLNKILNYIVFIGAVGLLIIALIPIMCTGFFNASVSFGGTSIIIIVGVVLET
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHH
LKQIESQMCNRYYKGFLSE
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFKTLVGAFKNKDIRKKIIYTLLILVVVRVGSLLPIPGVDTNYFSSLLSGINTGDLSYLS
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCHHHHH
AFTGGSFERMSLFALSITPYITSSIIMQLLTIAIPKLEEMQKEGEDGRKKIASITRYVTI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHH
GLSLIESIAMAVGFGRTGLIKDSAQLSTLHYVVCIIVVVAALTAGSAVLMWLGERITEKG
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
VGNGISIVLLINIISGMPSDFATLYSTFVAPKTPAKGVLAAVIILAILIVMVVLVCFLQD
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
GERRIPVQYSQKVSGRRTVGGQSTNIPLKVNTAGVMPIIFASSLMQFPVIIAQLFGKSYE
CCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
WTRYLSSSYWCRVEAPKYSIGLLVYIVLLIIFAYFYTSITFNPIEVADNLKKAGGVIPGI
HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
TPGKSTSEYLNKILNYIVFIGAVGLLIIALIPIMCTGFFNASVSFGGTSIIIIVGVVLET
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHH
LKQIESQMCNRYYKGFLSE
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA