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The map label for this gene is rpe [H]

Identifier: 238916225

GI number: 238916225

Start: 289534

End: 290190

Strand: Direct

Name: rpe [H]

Synonym: EUBELI_00259

Alternate gene names: 238916225

Gene position: 289534-290190 (Clockwise)

Preceding gene: 238916224

Following gene: 238916226

Centisome position: 13.5

GC content: 37.75

Gene sequence:

>657_bases
ATGTACACAGAATTAACAGCGTCTATGATGTGTGCCAATTTTGGCAATTTAGAGAAAGAGGTCAGAGAACTTGATGCGGC
AGGAATTGATTCATTCCACATTGATATTATGGATGGGCGTTATGTACCGAATTTTGCAATGTCTCTTAATGATATGAGAT
ATATTCGTTCTGCAACGGACAAGCCATTAGATGTTCATCTTATGATTGAACATCCTAATACTCATATTAATCTGTTTCTT
AATTCACTTAAGGAAGGAGACACTGTGTATATTCATCCTGAGGCAGAATATCATCCTTCTACTACATTACAGAAGATAAT
TAATGCAGGACTTATTCCGGGAATAGCTATTAATCCGGGAACAAGCATTGAGACTGTTATGGAGATGCTGCAGATTGTAG
ATAAAGTACTTGTTATGTCTGTTAATCCGGGAAATGCAGGGCAGATGTATCTTCCATATGTCGGTAAGAAGATAGAAAGA
CTTCTTAAGATTCGGGAAGAAATGAATTTTGAAGTGTACTGGGATGGTGCATGTGGTGCAGACAAAATATCTACATTTGC
ACCGATGGGAGTAAAAGGATTTGTCCTTGGAACAACATTGCTCTTTGGCAAGGGGAGGCCATATGCTGATATATTAAAGG
AGATAAGAAGATTATGA

Upstream 100 bases:

>100_bases
GCAGCGAATATGGTATTGTAAGATTTACATTGCCATTTTTTGAACGGTTTGTCATAGAGAATTACTACGAGTAGTTGTTT
AGATACAGGAAGGAATATAT

Downstream 100 bases:

>100_bases
TTCTTGATAATAATGTCTACGATATGTCAGAAAATATGATAATTGAATATGCTAATAAGTTAGCAGATGCAATAGAATGT
AATCAGCTTCTTGAAGAGTA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MYTELTASMMCANFGNLEKEVRELDAAGIDSFHIDIMDGRYVPNFAMSLNDMRYIRSATDKPLDVHLMIEHPNTHINLFL
NSLKEGDTVYIHPEAEYHPSTTLQKIINAGLIPGIAINPGTSIETVMEMLQIVDKVLVMSVNPGNAGQMYLPYVGKKIER
LLKIREEMNFEVYWDGACGADKISTFAPMGVKGFVLGTTLLFGKGRPYADILKEIRRL

Sequences:

>Translated_218_residues
MYTELTASMMCANFGNLEKEVRELDAAGIDSFHIDIMDGRYVPNFAMSLNDMRYIRSATDKPLDVHLMIEHPNTHINLFL
NSLKEGDTVYIHPEAEYHPSTTLQKIINAGLIPGIAINPGTSIETVMEMLQIVDKVLVMSVNPGNAGQMYLPYVGKKIER
LLKIREEMNFEVYWDGACGADKISTFAPMGVKGFVLGTTLLFGKGRPYADILKEIRRL
>Mature_218_residues
MYTELTASMMCANFGNLEKEVRELDAAGIDSFHIDIMDGRYVPNFAMSLNDMRYIRSATDKPLDVHLMIEHPNTHINLFL
NSLKEGDTVYIHPEAEYHPSTTLQKIINAGLIPGIAINPGTSIETVMEMLQIVDKVLVMSVNPGNAGQMYLPYVGKKIER
LLKIREEMNFEVYWDGACGADKISTFAPMGVKGFVLGTTLLFGKGRPYADILKEIRRL

Specific function: D-ALLOSE METABOLISM. ESSENTIAL FOR THIS PATHWAY. [C]

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=201, Percent_Identity=27.363184079602, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI219879828, Length=211, Percent_Identity=27.0142180094787, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1790523, Length=206, Percent_Identity=29.6116504854369, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789788, Length=216, Percent_Identity=29.6296296296296, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790754, Length=159, Percent_Identity=28.3018867924528, Blast_Score=80, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17552948, Length=201, Percent_Identity=29.3532338308458, Blast_Score=91, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6322341, Length=232, Percent_Identity=28.8793103448276, Blast_Score=100, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24586301, Length=210, Percent_Identity=27.6190476190476, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24446; Mature: 24446

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTELTASMMCANFGNLEKEVRELDAAGIDSFHIDIMDGRYVPNFAMSLNDMRYIRSATD
CCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
KPLDVHLMIEHPNTHINLFLNSLKEGDTVYIHPEAEYHPSTTLQKIINAGLIPGIAINPG
CCEEEEEEEECCCCEEEEEEHHCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCEEECCC
TSIETVMEMLQIVDKVLVMSVNPGNAGQMYLPYVGKKIERLLKIREEMNFEVYWDGACGA
CCHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCC
DKISTFAPMGVKGFVLGTTLLFGKGRPYADILKEIRRL
HHHHHCCCCCCCHHHHHHEEEECCCCCHHHHHHHHHCC
>Mature Secondary Structure
MYTELTASMMCANFGNLEKEVRELDAAGIDSFHIDIMDGRYVPNFAMSLNDMRYIRSATD
CCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
KPLDVHLMIEHPNTHINLFLNSLKEGDTVYIHPEAEYHPSTTLQKIINAGLIPGIAINPG
CCEEEEEEEECCCCEEEEEEHHCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCEEECCC
TSIETVMEMLQIVDKVLVMSVNPGNAGQMYLPYVGKKIERLLKIREEMNFEVYWDGACGA
CCHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCEEEEECCCCCC
DKISTFAPMGVKGFVLGTTLLFGKGRPYADILKEIRRL
HHHHHCCCCCCCHHHHHHEEEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]